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BaseInfo

ncRNA ID novel_zma_miR1376
Species Zea mays
Class miRNA
Genome position Chr9:23682633-23682691 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089711;SRR2089706
Length 24
Mature sequence(if miRNA) 36 - CGUUACUGUAAUGAGCCAGCUCGG - 59
Stem-loop(if miRNA) --C    C            -CU  -   CG
   AGCU GGCUCGUUAUGG   CG GCU  U
   |||| ||||||||||||   || |||
   UCGA CCGAGUAAUGUC   GC CGG  U
GGC    -            AUU  U   UA
Stem-loop sequence CAGCUCGGCUCGUUAUGGCUCGGCUCGUUAUGGCUCGUUACUGUAAUGAGCCAGCUCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008653257.2
ncRNA:24   GGCUCGACCGAGUAAUGUCAUUGC   1
  |||||||*|||=||||||||||||
targets:641   CCGAGCUAGCUUAUUACAGUAACG   664

2.5 PREDICTED: Zea mays carbonic anhydrase (LOC100283312), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008653255.2
ncRNA:24   GGCUCGACCGAGUAAUGUCAUUGC   1
  |||||||*|||=||||||||||||
targets:643   CCGAGCUAGCUUAUUACAGUAACG   666

2.5 PREDICTED: Zea mays carbonic anhydrase (LOC100283312), transcript variant X3, mRNA NA coding protein psRNATarget