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BaseInfo

ncRNA ID	novel_zma_miR1373
Species	Zea mays
Class	miRNA
Genome position	Chr9:92313168-92313249 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287031;SRR2287165;SRR2089707
Length	24
Mature sequence(if miRNA)	59 - AGAAGGGGAUUGGAGGGGAUUAAA - 82
Stem-loop(if miRNA)	--                                  G   A   AGAAGGGGAUUGGAGGGGAUUAAAUCCCCUCCUA UCA A   |||||||||||||||||||||||||||||||||| |||   UUUUCCCCUAACCUCCCCUAAUUUAGGGGAGGAU AGU A UG                                  A   A
Stem-loop sequence	AGAAGGGGAUUGGAGGGGAUUAAAUCCCCUCCUAGUCAAAAAUGAAUAGGAGGGGAUUUAAUCCCCUCCAAUCCCCUUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968801.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||=|||||=|||||||||| targets:524   UUUAAUCUCCUCCGAUCCCCUUCU   547 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||=|||||=|||||||||| targets:524   UUUAAUCUCCUCCGAUCCCCUUCU   547 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
HI403013.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||||||||||||=|||||* targets:38   UUUAAUCCCCUCCAAUCUCCUUCA   61 Target Full Sequence	2.5	Sequence 1138 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235143.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||||||||||||=|||||* targets:38   UUUAAUCCCCUCCAAUCUCCUUCA   61 Target Full Sequence	2.5	Sequence 1138 from Patent EP2985353	NA	coding protein	psRNATarget
JB163474.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||||||||||||=|||||* targets:38   UUUAAUCCCCUCCAAUCUCCUUCA   61 Target Full Sequence	2.5	Sequence 1138 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||=|||||||||||||||* targets:86   UUUAAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	2.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||*||* targets:3268   UUUAAUCCCCUCCAAUCCCCCUCA   3291 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||*||* targets:1589   UUUAAUCCCCUCCAAUCCCCCUCA   1612 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||*||* targets:1589   UUUAAUCCCCUCCAAUCCCCCUCA   1612 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT017268.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||*||||||||||||||||||=* targets:908   UUUCAUCCCCUCCAAUCCCCUUUG   931 Target Full Sequence	2.5	Zea mays clone EL01N0312A05.c mRNA sequence	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||*||||||||||||||*||| targets:79   UUUAAACCCCUCCAAUCCCCAUCU   102 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||*||||||||||||||*||| targets:79   UUUAAACCCCUCCAAUCCCCAUCU   102 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||*||||||||||||||*||| targets:79   UUUAAACCCCUCCAAUCCCCAUCU   102 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||*||||||||||||||*||| targets:1599   UUUAAACCCCUCCAAUCCCCCUCU   1622 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ089372.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   *|*|||=|||||=||||||||||| targets:71   CUCAAUUCCCUCUAAUCCCCUUCU   94 Target Full Sequence	2.5	TSA: Zea mays contig25018, mRNA sequence	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   *||||*||||||||||*||||||| targets:92   AUUAAACCCCUCCAAUACCCUUCU   115 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   *||||*||||||||||*||||||| targets:92   AUUAAACCCCUCCAAUACCCUUCU   115 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   *||||*||||||||||*||||||| targets:92   AUUAAACCCCUCCAAUACCCUUCU   115 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||*|||||||||||||||||*|* targets:681   UUUUAUCCCCUCCAAUCCCCUCCG   704 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||*|||||||||||||||||*|* targets:1561   UUUUAUCCCCUCCAAUCCCCUCCG   1584 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||*|||||||||||||||||*|* targets:1581   UUUUAUCCCCUCCAAUCCCCUCCG   1604 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||*|||||||||||||||||*|* targets:1605   UUUUAUCCCCUCCAAUCCCCUCCG   1628 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||||||*|*|||||||||||||* targets:1400   UUUAAUCACAUCCAAUCCCCUUCG   1423 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   AAAUUAGGGGAGGUUAGGGGAAGA   1   |||*|||||||||||||||||*|* targets:1638   UUUUAUCCCCUCCAAUCCCCUCCG   1661 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:19   AGGGGAGGUUAGGGGAAGA   1   ||||||=|||||||||||| targets:1   UCCCCUUCAAUCCCCUUCU   19 Target Full Sequence	1.5	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
AY104196.1	ncRNA:24   AA-AUUAGGGGAGGUUAGGGGAAGA   1   ||-|*||||=|*||||||||||||| targets:159   UUCUCAUCCUCACCAAUCCCCUUCU   183 Target Full Sequence	2.0	Zea mays PCO147635 mRNA sequence	NA	coding protein	psRNATarget
BT053886.1	ncRNA:24   AA-AUUAGGGGAGGUUAGGGGAAGA   1   ||-|*||||=|*||||||||||||| targets:1214   UUCUCAUCCUCACCAAUCCCCUUCU   1238 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0012K16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152267.1	ncRNA:24   AA-AUUAGGGGAGGUUAGGGGAAGA   1   ||-|*||||=|*||||||||||||| targets:1214   UUCUCAUCCUCACCAAUCCCCUUCU   1238 Target Full Sequence	2.0	Zea mays hydroxyproline-rich glycoprotein family protein (pco147635a), mRNA	NA	coding protein	psRNATarget