ncRNA ID | osa-miR395x |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr4:32623067-32623162 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 61 - GUGAAGUGUUUGGAGUAGCUC - 81 |
Stem-loop(if miRNA) |
A      AU     U     CU        U       -  A    AA  UUUGGU  CGCCA GAGUU  CUUCAAAC CUUCAUA CG CACU  U  ||||||  ||||| |||||  |||||||| ||||||| || ||||  AAACCA  GUGGU CUCGA  GAGGUUUG GAAGUGU GU GUGA  U C      CU     U     -U        U       U  A    AC |
Stem-loop sequence | AUUUGGUAUCGCCAUGAGUUCUCUUCAAACUCUUCAUACGACACUAAUUCAAGUGAUGUUGUGAAGUGUUUGGAGUAGCUCUUGGUGUCACCAAAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK067071.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013091I09, full insert sequence | NA | coding protein | psRNATarget | |||||||||
XM_015755214.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group rhodanese-like domain-containing protein 9, chloroplastic (LOC4346604), mRNA | rhodanese-like domain-containing protein 9, chloroplastic(LOC4346604) | coding protein | psRNATarget |
1 | PMID:19951405
"Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins"; Merchan F, Boualem A, Crespi M, Frugier F; Genome Biol. 10:R136(2009). |