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BaseInfo

ncRNA ID novel_zma_miR1348
Species Zea mays
Class miRNA
Genome position Chr9:151213343-151213426 [+]
Reference genome RefGen_v4
Source SRR2089710
Length 24
Mature sequence(if miRNA) 1 - AUAGAGUGGAUUGAGGGGGCUAGA - 24
Stem-loop(if miRNA) --      U  -AU               ACA      C   A
  AUAGAG GG   UGAGGGGGCUAGAAU   UCGCUA UCA U
  |||||| ||   |||||||||||||||   |||||| |||
  UAUUUC CC   ACUUCCCCGAUCUUA   AGUGAU AGU U
CC      -  AUU               GGG      A   U
Stem-loop sequence AUAGAGUGGAUUGAGGGGGCUAGAAUACAUCGCUACUCAAUUUUGAAUAGUGAGGGAUUCUAGCCCCUUCAUUACCCUUUAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ055935.1
ncRNA:24   AGAUCGGGGGAGUUAGGUGAGAUA   1
  |=||-|*||||||||||||||*||
targets:15   UUUA-CACCCUCAAUCCACUCCAU   37

2.5 TSA: Zea mays contig57057, mRNA sequence NA coding protein psRNATarget