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BaseInfo

ncRNA ID novel_zma_miR1346
Species Zea mays
Class miRNA
Genome position Chr9:136433884-136433937 [+]
Reference genome RefGen_v4
Source SRR2089710
Length 24
Mature sequence(if miRNA) 31 - AACUUCCUACGGCUUACUGUAUCC - 54
Stem-loop(if miRNA) --U   U    C  C           C
   UAC GUAG CC UAGGAAGUUAG U
   ||| |||| || |||||||||||
   AUG CAUU GG AUCCUUCAAUC G
CCU   U    C  C           G
Stem-loop sequence UUACUGUAGCCCCUAGGAAGUUAGCUGGCUAACUUCCUACGGCUUACUGUAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020543465.1
ncRNA:24   CCUAUGUCAUUCGGCAUCCUUCAA   1
  ||*||||||=|||||||*||||||
targets:576   GGCUACAGUGAGCCGUACGAAGUU   599

2.5 PREDICTED: Zea mays phosphopantothenoylcysteine decarboxylase (LOC100192815), transcript variant X6, mRNA NA coding protein psRNATarget
EU949881.1
ncRNA:24   CCUAUGUCAUUCGGCAUCCUUCAA   1
  ***||*||*|=|||||||||||||
targets:1063   UCCUAGAGCAGGCCGUAGGAAGUU   1086

3.0 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget