Search result

BaseInfo

ncRNA ID	novel_zma_miR1344
Species	Zea mays
Class	miRNA
Genome position	Chr9:135635604-135635711 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	1 - GCGGACGGUCCGCGACCUGGGGCC - 24
Stem-loop(if miRNA)	--      G     C A  UG    -     G     C A  --U  C       - U   GCGGAC GUCCG G CC  GGGC CGGAC GUCCG G CC   GG GCAGGGG C A   |||||| ||||| | ||  |||| ||||| ||||| | ||   || ||||||| |   CGCCUG CAGGC C GG  CCCG GCCUG CAGGC C GG   UC CGUCCUU G A CG      G     - G  GU    C     G     - -  CAG  -       U G
Stem-loop sequence	GCGGACGGUCCGCGACCUGGGGCCGGACGGUCCGCGACCUGGCGCAGGGGCUAAGGUUUCCUGCCUGACGGCCGGACGGUCCGCGCCCUGGGGCCGGACGGUCCGCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ073491.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   |||||||||*|||||||||||||| targets:87   GGCCCCAGGCCGCGGACCGUCCGC   110 Target Full Sequence	1.0	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   |||||||||*|||||||||||||* targets:1190   GGCCCCAGGGCGCGGACCGUCCGG   1213 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   ||||=||||*|||||||*|||||| targets:1261   GGCCUCAGGCCGCGGACAGUCCGC   1284 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   |||||||||*|||||||||||||* targets:1190   GGCCCCAGGGCGCGGACCGUCCGG   1213 Target Full Sequence	2.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   ||||=||||*|||||||*|||||| targets:1261   GGCCUCAGGCCGCGGACAGUCCGC   1284 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   |||||||||*|||||||*|||||| targets:2704   GGCCCCAGGCCGCGGACAGUCCGC   2727 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   *||*|||||*|||||||||||||* targets:2755   CGCACCAGGCCGCGGACCGUCCGG   2778 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EZ096610.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   *||*=||||||||||||||||||* targets:60   CGCGUCAGGUCGCGGACCGUCCGG   83 Target Full Sequence	2.5	TSA: Zea mays contig32265, mRNA sequence	NA	coding protein	psRNATarget
HI409768.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   *||*||||||||=||||||||||* targets:10   UGCGCCAGGUCGUGGACCGUCCGA   33 Target Full Sequence	2.5	Sequence 7893 from Patent EP2074227	NA	coding protein	psRNATarget
JB170229.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   *||*||||||||=||||||||||* targets:10   UGCGCCAGGUCGUGGACCGUCCGA   33 Target Full Sequence	2.5	Sequence 7893 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241898.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   *||*||||||||=||||||||||* targets:10   UGCGCCAGGUCGUGGACCGUCCGA   33 Target Full Sequence	2.5	Sequence 7893 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235209.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   *||*||||||||||||=||||||* targets:11   UGCGCCAGGUCGCGGAUCGUCCGG   34 Target Full Sequence	2.5	Sequence 1204 from Patent EP2985353	NA	coding protein	psRNATarget
HI403079.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   *||*||||||||||||=||||||* targets:11   UGCGCCAGGUCGCGGAUCGUCCGG   34 Target Full Sequence	2.5	Sequence 1204 from Patent EP2074227	NA	coding protein	psRNATarget
JB163540.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   *||*||||||||||||=||||||* targets:11   UGCGCCAGGUCGCGGAUCGUCCGG   34 Target Full Sequence	2.5	Sequence 1204 from Patent EP2559767	NA	coding protein	psRNATarget
BT039435.1	ncRNA:24   CCGG------GGUCCAGCGCCUGGCAGGCG   1   *|||------||||||=||||||||||||* targets:263   AGCCUCUACGCCAGGUUGCGGACCGUCCGA   292 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ067064.1	ncRNA:24   CCGGGGUCCAGCGCCUGGCAGGCG   1   ||||||*|**|||||||||||||| targets:21   GGCCCCUGCGCGCGGACCGUCCGC   44 Target Full Sequence	3.0	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget