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BaseInfo

ncRNA ID	novel_zma_miR1339
Species	Zea mays
Class	miRNA
Genome position	Chr10:149451808-149451904 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287162
Length	21
Mature sequence(if miRNA)	77 - CUCCAAAGGGAUCGCAUUGAU - 97
Stem-loop(if miRNA)	--C           C        CUAAC    ---CGA   AC  -  -  G    UCCAAAGGGAU GCAUUGAU     CUGC      UCG  GC CG AC U    ||||||||||| ||||||||     ||||      |||  || || ||    AGGUUUCCCUA CGUGACUG     GACG      AGC  CG GC UG A UUA           A        -ACUA    AACAGG   -C  U  A  C
Stem-loop sequence	CUCCAAAGGGAUCGCAUUGAUCUAACCUGCCGAUCGACGCCGACGUACGUACGUGCCCGAGGACAAGCAGAUCAGUCAGUGCAAUCCCUUUGGAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235329.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   ||||||||||||||||||||| targets:86   AUCAAUGCGAUCCCUUUGGAG   106 Target Full Sequence	0.0	Sequence 1324 from Patent EP2985353	NA	coding protein	psRNATarget
JB163377.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   ||||||||||||||||||||| targets:86   AUCAAUGCGAUCCCUUUGGAG   106 Target Full Sequence	0.0	Sequence 1041 from Patent EP2559767	NA	coding protein	psRNATarget
JB163660.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   ||||||||||||||||||||| targets:86   AUCAAUGCGAUCCCUUUGGAG   106 Target Full Sequence	0.0	Sequence 1324 from Patent EP2559767	NA	coding protein	psRNATarget
HI403199.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   ||||||||||||||||||||| targets:86   AUCAAUGCGAUCCCUUUGGAG   106 Target Full Sequence	0.0	Sequence 1324 from Patent EP2074227	NA	coding protein	psRNATarget
HI402916.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   ||||||||||||||||||||| targets:86   AUCAAUGCGAUCCCUUUGGAG   106 Target Full Sequence	0.0	Sequence 1041 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235046.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   ||||||||||||||||||||| targets:86   AUCAAUGCGAUCCCUUUGGAG   106 Target Full Sequence	0.0	Sequence 1041 from Patent EP2985353	NA	coding protein	psRNATarget
AY105491.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   =*||||||||||||||||||* targets:41   GACAAUGCGAUCCCUUUGGAU   61 Target Full Sequence	1.0	Zea mays PCO100080 mRNA sequence	NA	coding protein	psRNATarget
BT017377.1	ncRNA:20   AGUUACGCUAGGGAAACCUC   1   *||||||||||||||||||* targets:1   ACAAUGCGAUCCCUUUGGAU   20 Target Full Sequence	1.0	Zea mays clone EL01N0325G08.c mRNA sequence	NA	coding protein	psRNATarget
AY109095.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   =*||||||||||||||||||* targets:164   GACAAUGCGAUCCCUUUGGAU   184 Target Full Sequence	1.0	Zea mays PCO106166 mRNA sequence	NA	coding protein	psRNATarget
EU946483.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   =*||||||||||||||||||* targets:277   GACAAUGCGAUCCCUUUGGAU   297 Target Full Sequence	1.0	Zea mays clone 313513 mRNA sequence	NA	coding protein	psRNATarget
XM_008658274.2	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   =*||||||||||||||||||* targets:1717   GACAAUGCGAUCCCUUUGGAU   1737 Target Full Sequence	1.0	PREDICTED: Zea mays transport inhibitor response 1-like protein Os05g0150500 (LOC103635896), mRNA	NA	coding protein	psRNATarget
BT037254.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   **||||||||||||||||||* targets:1863   CACAAUGCGAUCCCUUUGGAU   1883 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0160H24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143136.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   **||||||||||||||||||* targets:1863   CACAAUGCGAUCCCUUUGGAU   1883 Target Full Sequence	1.0	Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), mRNA	NA	coding protein	psRNATarget
XM_008663266.2	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   **||||||||||||||||||* targets:2197   CACAAUGCGAUCCCUUUGGAU   2217 Target Full Sequence	1.0	PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008663267.2	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   **||||||||||||||||||* targets:2194   CACAAUGCGAUCCCUUUGGAU   2214 Target Full Sequence	1.0	PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671272.2	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   =*||||||||||||||||||* targets:2544   GACAAUGCGAUCCCUUUGGAU   2564 Target Full Sequence	1.0	PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100278846), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548313.1	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   =*||||||||||||||||||* targets:2341   GACAAUGCGAUCCCUUUGGAU   2361 Target Full Sequence	1.0	PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100278846), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY105330.2	ncRNA:21   UAGUUACGCUAGGGAAACCUC   1   =*|||||||||=||||||||* targets:803   GACAAUGCGAUUCCUUUGGAU   823 Target Full Sequence	2.5	Zea mays PCO100079 mRNA sequence	NA	coding protein	psRNATarget