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BaseInfo

ncRNA ID	novel_zma_miR1338
Species	Zea mays
Class	miRNA
Genome position	Chr2:135647019-135647149 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - GUUCCCAAACUAGCCCUUAGUGUU - 24
Stem-loop(if miRNA)	--    U  C          C   -  C      A                 CCAAUU  A    AA   CGCU AG GCUAGUUUGG AAC CU AAUUUU CAAGAGAUUUCUAUUUU      GA AAAU  A   |||| || |||||||||| ||| || |||||| |||||||||||||||||      || ||||   GUGA UC CGAUCAAACC UUG GA UUAAAA GUUCUCUAAAGAUAAAA      CU UUUA  C UU    U  C          C   A  -      G                 -AAAUU  C    AU
Stem-loop sequence	CGCUUAGCGCUAGUUUGGCAACCUCAAUUUUACAAGAGAUUUCUAUUUUCCAAUUGAAAAAUAAACUAAUUUCUCUUAAAAAAAUAGAAAUCUCUUGGAAAAUUAGAGUUCCCAAACUAGCCCUUAGUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ074100.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *|||=|||||||||||||||||=| targets:125   CACAUUAAGGGCUAGUUUGGGAGC   148 Target Full Sequence	1.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
HI406238.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:3   AAUACUUAGGGCUAGUUUGGGAAC   26 Target Full Sequence	1.0	Sequence 4363 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238368.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:3   AAUACUUAGGGCUAGUUUGGGAAC   26 Target Full Sequence	1.0	Sequence 4363 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238508.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:3   AAUACUUAGGGCUAGUUUGGGAAC   26 Target Full Sequence	1.0	Sequence 4503 from Patent EP2985353	NA	coding protein	psRNATarget
JB166699.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:3   AAUACUUAGGGCUAGUUUGGGAAC   26 Target Full Sequence	1.0	Sequence 4363 from Patent EP2559767	NA	coding protein	psRNATarget
JB166839.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:3   AAUACUUAGGGCUAGUUUGGGAAC   26 Target Full Sequence	1.0	Sequence 4503 from Patent EP2559767	NA	coding protein	psRNATarget
HI406378.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:3   AAUACUUAGGGCUAGUUUGGGAAC   26 Target Full Sequence	1.0	Sequence 4503 from Patent EP2074227	NA	coding protein	psRNATarget
JB167565.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:4   AAUACUUAGGGCUAGUUUGGGAAC   27 Target Full Sequence	1.0	Sequence 5229 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239234.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:4   AAUACUUAGGGCUAGUUUGGGAAC   27 Target Full Sequence	1.0	Sequence 5229 from Patent EP2985353	NA	coding protein	psRNATarget
HI407104.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:4   AAUACUUAGGGCUAGUUUGGGAAC   27 Target Full Sequence	1.0	Sequence 5229 from Patent EP2074227	NA	coding protein	psRNATarget
BT068475.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*||||||||||||||||| targets:46   AAUACUUAGGGCUAGUUUGGGAAC   69 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0215I17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664818.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||=||||||||||||||||||| targets:4404   CUCAUUAAGGGCUAGUUUGGGAAC   4427 Target Full Sequence	0.0	PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546085.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||=||||||||||||||||||| targets:4423   CUCAUUAAGGGCUAGUUUGGGAAC   4446 Target Full Sequence	0.0	PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X8, mRNA	NA	coding protein	psRNATarget
LQ238344.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |||*||||||||||||||||||== targets:3   AACUCUAAGGGCUAGUUUGGGAGU   26 Target Full Sequence	2.5	Sequence 4339 from Patent EP2985353	NA	coding protein	psRNATarget
JB166675.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |||*||||||||||||||||||== targets:3   AACUCUAAGGGCUAGUUUGGGAGU   26 Target Full Sequence	2.5	Sequence 4339 from Patent EP2559767	NA	coding protein	psRNATarget
HI406214.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |||*||||||||||||||||||== targets:3   AACUCUAAGGGCUAGUUUGGGAGU   26 Target Full Sequence	2.5	Sequence 4339 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |||*||||||||||||||||||== targets:2420   AACUCUAAGGGCUAGUUUGGGAGU   2443 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **=*=||||||||||||||||||| targets:2297   UCUCUUAAGGGCUAGUUUGGGAAC   2320 Target Full Sequence	0.0	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |||*||||||||||||||||||== targets:2438   AACUCUAAGGGCUAGUUUGGGAGU   2461 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **=*=||||||||||||||||||| targets:2315   UCUCUUAAGGGCUAGUUUGGGAAC   2338 Target Full Sequence	0.0	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ108668.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =||*=|=||||||||||||||||| targets:245   GACCUUGAGGGCUAGUUUGGGAAC   268 Target Full Sequence	1.0	TSA: Zea mays contig44327, mRNA sequence	NA	coding protein	psRNATarget
BT069533.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =||*=|=||||||||||||||||| targets:743   GACCUUGAGGGCUAGUUUGGGAAC   766 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155N16 mRNA, complete cds	NA	coding protein	psRNATarget
EU959015.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =||*=|=||||||||||||||||| targets:858   GACCUUGAGGGCUAGUUUGGGAAC   881 Target Full Sequence	1.0	Zea mays clone 209040 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678318.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =||*=|=||||||||||||||||| targets:894   GACCUUGAGGGCUAGUUUGGGAAC   917 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (umc1548), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT037289.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =||*=|=||||||||||||||||| targets:1059   GACCUUGAGGGCUAGUUUGGGAAC   1082 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0161J17 mRNA, complete cds	NA	coding protein	psRNATarget
BT035559.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =||*=|=||||||||||||||||| targets:1129   GACCUUGAGGGCUAGUUUGGGAAC   1152 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0069I21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138464.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =||*=|=||||||||||||||||| targets:1129   GACCUUGAGGGCUAGUUUGGGAAC   1152 Target Full Sequence	1.0	Zea mays uncharacterized LOC100193327 (umc1548), mRNA	NA	coding protein	psRNATarget
BT061015.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =||*=|=||||||||||||||||| targets:1319   GACCUUGAGGGCUAGUUUGGGAAC   1342 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0085L08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165822.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =||*=|=||||||||||||||||| targets:1319   GACCUUGAGGGCUAGUUUGGGAAC   1342 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304386 (LOC100304386), mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|=|||||*|||||||||||=| targets:3410   AAUAUUAAGGACUAGUUUGGGAGC   3433 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|=|||||*|||||||||||=| targets:3445   AAUAUUAAGGACUAGUUUGGGAGC   3468 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ095113.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|||*|||*||||||||||||| targets:52   AAUACUCAGGACUAGUUUGGGAAC   75 Target Full Sequence	2.0	TSA: Zea mays contig30766, mRNA sequence	NA	coding protein	psRNATarget
HI407023.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ***==||||||||||||||||||| targets:4   UUGGUUAAGGGCUAGUUUGGGAAC   27 Target Full Sequence	0.0	Sequence 5148 from Patent EP2074227	NA	coding protein	psRNATarget
JB167484.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ***==||||||||||||||||||| targets:4   UUGGUUAAGGGCUAGUUUGGGAAC   27 Target Full Sequence	0.0	Sequence 5148 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239153.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ***==||||||||||||||||||| targets:4   UUGGUUAAGGGCUAGUUUGGGAAC   27 Target Full Sequence	0.0	Sequence 5148 from Patent EP2985353	NA	coding protein	psRNATarget
BT069551.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||||=|||||*||||*|||||||| targets:222   AACAUUAAGGACUAGCUUGGGAAC   245 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0167A20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143020.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |||*=|*||||||||||||||||| targets:1591   AACCUUUAGGGCUAGUUUGGGAAC   1614 Target Full Sequence	1.0	Zea mays CBS domain-containing protein CBSCBSPB2 (LOC100216607), mRNA	NA	coding protein	psRNATarget
BT037036.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |||*=|*||||||||||||||||| targets:1591   AACCUUUAGGGCUAGUUUGGGAAC   1614 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0152E23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678433.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |||*=|*||||||||||||||||| targets:2064   AACCUUUAGGGCUAGUUUGGGAAC   2087 Target Full Sequence	1.0	PREDICTED: Zea mays CBS domain-containing protein CBSCBSPB2 (LOC100216607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU947368.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||=|*||||||||||||||||| targets:283   UCCAUUUAGGGCUAGUUUGGGAAC   306 Target Full Sequence	1.0	Zea mays clone 341178 mRNA sequence	NA	coding protein	psRNATarget
NM_001151652.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **=*||||||||||||||||||=| targets:1190   CUUUCUAAGGGCUAGUUUGGGAGC   1213 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278349 (LOC100278349), mRNA	NA	coding protein	psRNATarget
EU973182.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **=*||||||||||||||||||=| targets:1190   CUUUCUAAGGGCUAGUUUGGGAGC   1213 Target Full Sequence	1.5	Zea mays clone 394629 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661273.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *||*||||||||||||||||*||| targets:1370   CACCCUAAGGGCUAGUUUGGCAAC   1393 Target Full Sequence	1.5	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 6 (LOC103638326), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661272.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *||*||||||||||||||||*||| targets:1595   CACCCUAAGGGCUAGUUUGGCAAC   1618 Target Full Sequence	1.5	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 6 (LOC103638326), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008659944.2	ncRNA:24   UUGU--GAUUCCCGAUCAAACCCUUG   1   |=||--||*|||||||||||||||=| targets:3460   AGCAUUCUUAGGGCUAGUUUGGGAGC   3485 Target Full Sequence	2.5	PREDICTED: Zea mays translocase of chloroplast 120, chloroplastic (LOC103637626), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008659946.2	ncRNA:24   UUGU--GAUUCCCGAUCAAACCCUUG   1   |=||--||*|||||||||||||||=| targets:3469   AGCAUUCUUAGGGCUAGUUUGGGAGC   3494 Target Full Sequence	2.5	PREDICTED: Zea mays translocase of chloroplast 120, chloroplastic (LOC103637626), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650584.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ***||||||*|||||||||||||| targets:917   CCGACUAAGAGCUAGUUUGGGAAC   940 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103629472), mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |=|*=|*||||||||||||||||| targets:1677   AGCCUUUAGGGCUAGUUUGGGAAC   1700 Target Full Sequence	1.0	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||=|*|=|||||||||||*||||| targets:2221   AAUAAUGAGGGCUAGUUUAGGAAC   2244 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
AY104920.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *==|=|||*||||||||||||||= targets:1424   UGUAUUAAAGGCUAGUUUGGGAAU   1447 Target Full Sequence	2.0	Zea mays PCO100740 mRNA sequence	NA	coding protein	psRNATarget
EZ517194.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||==-|||||||||||||||*||| targets:301   AAUG-UAAGGGCUAGUUUGGUAAC   323 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL602Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
XM_008646834.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||==-|||||||||||||||*||| targets:4098   AAUG-UAAGGGCUAGUUUGGUAAC   4120 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103626423), mRNA	NA	coding protein	psRNATarget
EZ080886.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||*||||*|||||||||||||| targets:2   UCCAAUAAGCGCUAGUUUGGGAAC   25 Target Full Sequence	1.0	TSA: Zea mays contig16525, mRNA sequence	NA	coding protein	psRNATarget
EZ063546.1	ncRNA:24   UU-GUGAUUCCCGAUCAAACCCUUG   1   ||-|*=|||||||||||||||*||| targets:179   AAUCUUUAAGGGCUAGUUUGGCAAC   203 Target Full Sequence	1.5	TSA: Zea mays contig64668, mRNA sequence	NA	coding protein	psRNATarget
BT063756.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||*||||||||||||*|||||| targets:1580   UCCAAUAAGGGCUAGUUGGGGAAC   1603 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0104A15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676336.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||||*|||||||||||||*||| targets:4274   UUCACUUAGGGCUAGUUUGGAAAC   4297 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008676333.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||||*|||||||||||||*||| targets:4288   UUCACUUAGGGCUAGUUUGGAAAC   4311 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676335.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||||*|||||||||||||*||| targets:4301   UUCACUUAGGGCUAGUUUGGAAAC   4324 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ101833.1	ncRNA:24   UUGU--GAUUCCCGAUCAAACCCUUG   1   ||||--=|*|||||||||||*||||| targets:93   AACAGUUUUAGGGCUAGUUUAGGAAC   118 Target Full Sequence	2.5	TSA: Zea mays contig37489, mRNA sequence	NA	coding protein	psRNATarget
BT016468.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *|=|=|*|||||||||||||*||| targets:936   UAUAUUUAGGGCUAGUUUGGAAAC   959 Target Full Sequence	2.5	Zea mays clone Contig301 mRNA sequence	NA	coding protein	psRNATarget
BT018436.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *|==|*||||||||*||||||||| targets:1669   CAUGCCAAGGGCUAAUUUGGGAAC   1692 Target Full Sequence	2.5	Zea mays clone EL01N0372B11.d mRNA sequence	NA	coding protein	psRNATarget
BT067220.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *||*=|=|||||||||||||*||| targets:600   CACUUUGAGGGCUAGUUUGGAAAC   623 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0325M14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176085.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *||*=|=|||||||||||||*||| targets:600   CACUUUGAGGGCUAGUUUGGAAAC   623 Target Full Sequence	2.5	Zea mays Protein NRT1/ PTR FAMILY 5.8 (LOC100383435), mRNA	NA	coding protein	psRNATarget
XM_008655309.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *|==|*||||||||*||||||||| targets:3316   CAUGCCAAGGGCUAAUUUGGGAAC   3339 Target Full Sequence	2.5	PREDICTED: Zea mays ubiquitin-activating enzyme E1 3 (LOC103633603), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655310.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *|==|*||||||||*||||||||| targets:3443   CAUGCCAAGGGCUAAUUUGGGAAC   3466 Target Full Sequence	2.5	PREDICTED: Zea mays ubiquitin-activating enzyme E1 3 (LOC103633603), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ105942.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||*=||*|||||||*||||||||| targets:60   AAAGCUUAGGGCUAAUUUGGGAAC   83 Target Full Sequence	2.5	TSA: Zea mays contig41600, mRNA sequence	NA	coding protein	psRNATarget
EZ069250.1	ncRNA:24   UUGUGAU-UCCCGAUCAAACCCUUG   1   *==|=|*-||||||||||||||||| targets:54   CGUAUUUUAGGGCUAGUUUGGGAAC   78 Target Full Sequence	3.0	TSA: Zea mays contig04885, mRNA sequence	NA	coding protein	psRNATarget
EU956525.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   =|=-||||||||||||||||*||= targets:1009   GAU-CUAAGGGCUAGUUUGGUAAU   1031 Target Full Sequence	2.5	Zea mays clone 1565383 mRNA sequence	NA	coding protein	psRNATarget
NM_001150835.1	ncRNA:24   UUGUGAU-UCCCGAUCAAACCCUUG   1   *==|=|*-||||||||||||||||| targets:868   CGUAUUUUAGGGCUAGUUUGGGAAC   892 Target Full Sequence	3.0	Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), mRNA	NA	coding protein	psRNATarget
EU967323.1	ncRNA:24   UUGUGAU-UCCCGAUCAAACCCUUG   1   *==|=|*-||||||||||||||||| targets:868   CGUAUUUUAGGGCUAGUUUGGGAAC   892 Target Full Sequence	3.0	Zea mays clone 301481 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660198.2	ncRNA:24   UUGUGAU-UCCCGAUCAAACCCUUG   1   *==|=|*-||||||||||||||||| targets:901   CGUAUUUUAGGGCUAGUUUGGGAAC   925 Target Full Sequence	3.0	PREDICTED: Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658839.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   ||-|||*|||||||||||||*||| targets:1128   AA-ACUUAGGGCUAGUUUGGCAAC   1150 Target Full Sequence	2.5	PREDICTED: Zea mays protein STRICTOSIDINE SYNTHASE-LIKE 10 (LOC103636496), mRNA	NA	coding protein	psRNATarget
EU956611.1	ncRNA:24   UUG---UGAUUCCCGAUCAAACCCUUG   1   ||=---|||*|||||||||||||*||| targets:1399   AAUUUAACUUAGGGCUAGUUUGGUAAC   1425 Target Full Sequence	2.5	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
LQ239290.1	ncRNA:24   UUGU-GAUUCCCGAUCAAACCCUUG   1   =||*-||*|||||||||||||||=| targets:221   GACUUCUUAGGGCUAGUUUGGGAGC   245 Target Full Sequence	2.5	Sequence 5285 from Patent EP2985353	NA	coding protein	psRNATarget
JB167621.1	ncRNA:24   UUGU-GAUUCCCGAUCAAACCCUUG   1   =||*-||*|||||||||||||||=| targets:221   GACUUCUUAGGGCUAGUUUGGGAGC   245 Target Full Sequence	2.5	Sequence 5285 from Patent EP2559767	NA	coding protein	psRNATarget
HI407160.1	ncRNA:24   UUGU-GAUUCCCGAUCAAACCCUUG   1   =||*-||*|||||||||||||||=| targets:221   GACUUCUUAGGGCUAGUUUGGGAGC   245 Target Full Sequence	2.5	Sequence 5285 from Patent EP2074227	NA	coding protein	psRNATarget
EU944659.1	ncRNA:24   UUGU-GAUUCCCGAUCAAACCCUUG   1   =||*-||*|||||||||||||||=| targets:1363   GACUUCUUAGGGCUAGUUUGGGAGC   1387 Target Full Sequence	2.5	Zea mays clone 225379 mRNA sequence	NA	coding protein	psRNATarget
XM_008677160.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||=|||*||||||||*|||||| targets:1398   UUCAUUAAAGGCUAGUUGGGGAAC   1421 Target Full Sequence	2.5	PREDICTED: Zea mays glyoxylate/succinic semialdehyde reductase 2, chloroplastic (LOC103651518), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008677159.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||=|||*||||||||*|||||| targets:1502   UUCAUUAAAGGCUAGUUGGGGAAC   1525 Target Full Sequence	2.5	PREDICTED: Zea mays glyoxylate/succinic semialdehyde reductase 2, chloroplastic (LOC103651518), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957224.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **|*=|*||||||||||||||||| targets:1868   CCCUUUUAGGGCUAGUUUGGGAAC   1891 Target Full Sequence	1.0	Zea mays clone 1586117 DHHC zinc finger domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154524.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **|*=|*||||||||||||||||| targets:1868   CCCUUUUAGGGCUAGUUUGGGAAC   1891 Target Full Sequence	1.0	Zea mays DHHC zinc finger domain containing protein (LOC100281605), mRNA	NA	coding protein	psRNATarget
XM_008669712.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **|*=|*||||||||||||||||| targets:2097   CCCUUUUAGGGCUAGUUUGGGAAC   2120 Target Full Sequence	1.0	PREDICTED: Zea mays DHHC zinc finger domain containing protein (LOC100281605), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651270.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||=|*|||||||||||||*||| targets:3885   CCCAUUUAGGGCUAGUUUGGUAAC   3908 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103630192), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651269.2	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   **||=|*|||||||||||||*||| targets:3928   CCCAUUUAGGGCUAGUUUGGUAAC   3951 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103630192), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU968340.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   *||*||||||*||||||||||*|| targets:619   UACUCUAAGGUCUAGUUUGGGUAC   642 Target Full Sequence	2.5	Zea mays clone 319179 mRNA sequence	NA	coding protein	psRNATarget
XM_020544094.1	ncRNA:24   UUGU-----GAUUCCCGAUCAAACCCUUG   1   ||||-----=|*|||||||||||||*||| targets:1203   AACAACUCUUUUAGGGCUAGUUUGGCAAC   1231 Target Full Sequence	2.5	PREDICTED: Zea mays 3-ketoacyl-CoA synthase 6 (LOC103638222), mRNA	NA	coding protein	psRNATarget
EZ113939.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |*=|=||||**||||||||||||| targets:201   AUUAUUAAGAACUAGUUUGGGAAC   224 Target Full Sequence	2.0	TSA: Zea mays contig49600, mRNA sequence	NA	coding protein	psRNATarget
AY109002.1	ncRNA:24   UUGUGAUUCCCGAUCAAACCCUUG   1   |=|-||||||*||*|||||||||| targets:1008   AGC-CUAAGGCCUUGUUUGGGAAC   1030 Target Full Sequence	2.5	Zea mays PCO100205 mRNA sequence	NA	coding protein	psRNATarget