Search result

BaseInfo

ncRNA ID	novel_zma_miR1337
Species	Zea mays
Class	miRNA
Genome position	Chr8:107968894-107968960 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089701
Length	24
Mature sequence(if miRNA)	1 - GAUGGGUAUGGGUAUGGAAUGGUA - 24
Stem-loop(if miRNA)	--  UG   A    U    -     -   -   CC   GA  GGU UGGG AUGG AAUGG UAC UAC  A   ||  ||| |||| |||| ||||| ||| |||  A   CU  UCA AUCC UACC UUGCC AUG AUG  C CU  GU   C    -    G     C   U   AG
Stem-loop sequence	GAUGGGUAUGGGUAUGGAAUGGUACUACCCAACGAGUAUGUACCCGUUGCCAUCCUACACUUGUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT042563.1	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||| targets:1675   UACCAUUCCAUACCCGUACCCAUC   1698 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0337N01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148592.1	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||| targets:1675   UACCAUUCCAUACCCGUACCCAUC   1698 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100274220), mRNA	NA	coding protein	psRNATarget
XM_020552401.1	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:539   UACCAUUCCAUACCCGUACCCAUA   562 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_008679607.2	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:541   UACCAUUCCAUACCCGUACCCAUA   564 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679614.2	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:540   UACCAUUCCAUACCCGUACCCAUA   563 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020552403.1	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:537   UACCAUUCCAUACCCGUACCCAUA   560 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020552402.1	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:539   UACCAUUCCAUACCCGUACCCAUA   562 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_008679610.2	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:541   UACCAUUCCAUACCCGUACCCAUA   564 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020552400.1	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:542   UACCAUUCCAUACCCGUACCCAUA   565 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008679609.2	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:540   UACCAUUCCAUACCCGUACCCAUA   563 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008679611.2	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:543   UACCAUUCCAUACCCGUACCCAUA   566 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008679606.2	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:541   UACCAUUCCAUACCCGUACCCAUA   564 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552399.1	ncRNA:24   AUGGUAAGGUAUGGGUAUGGGUAG   1   |||||||||||||||=|||||||* targets:541   UACCAUUCCAUACCCGUACCCAUA   564 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT035607.1	ncRNA:24   AUGGUAAGG-UAUGGGUAUGGGUAG   1   **||||*||-||||||||||||||| targets:608   CCCCAUACCCAUACCCAUACCCAUC   632 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0071N09 mRNA, complete cds	NA	coding protein	psRNATarget
EU974919.1	ncRNA:24   AUGGUAAGG-UAUGGGUAUGGGUAG   1   **||||*||-||||||||||||||| targets:550   CCCCAUACCCAUACCCAUACCCAUC   574 Target Full Sequence	3.0	Zea mays clone 461100 mRNA sequence	NA	coding protein	psRNATarget