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BaseInfo

ncRNA ID novel_zma_miR1334
Species Zea mays
Class miRNA
Genome position Chr8:91941008-91941125 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089711;SRR2089713;SRR2089714;SRR1997865;SRR1997866;SRR2089699;SRR2089701;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707
Length 24
Mature sequence(if miRNA) 95 - AUCAUAUGUGUGAGACUUGAUCGU - 118
Stem-loop(if miRNA) --     UU     ---         UAA    --UUA  UAUUUUGUACAGAACUCCAUUA
  GAUCG  GUCUU   CGUAUGAUG   UCAU     AC                      U
  |||||  |||||   |||||||||   ||||     ||                      A
  CUAGU  CAGAG   GUAUACUAU   AGUA     UC                      U
UG     -U     UGU         -UG    CCAUG  UAUACUUACAGUGUAGAAAUUA
Stem-loop sequence GAUCGUUGUCUUCGUAUGAUGUAAUCAUUUAACUAUUUUGUACAGAACUCCAUUAUAUAUUAAAGAUGUGACAUUCAUAUCUGUACCAUGAGUUAUCAUAUGUGUGAGACUUGAUCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU974341.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  |*||||||||||||||||||||||
targets:1027   AGGAUCAAGUCUCACACAUAUGAU   1050

0.0 Zea mays clone 446742 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU966329.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  |=||||||||=|=|||||||||||
targets:1363   AUGAUCAAGUUUUACACAUAUGAU   1386

2.5 Zea mays clone 293673 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008667514.2
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  |*||||||||||||||||||||||
targets:1457   AGGAUCAAGUCUCACACAUAUGAU   1480

0.0 PREDICTED: Zea mays uncharacterized LOC103644312 (LOC103644312), mRNA NA coding protein psRNATarget
BT033287.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  |=||||||||=|=|||||||||||
targets:1560   AUGAUCAAGUUUUACACAUAUGAU   1583

2.5 Zea mays full-length cDNA clone ZM_BFb0128N11 mRNA, complete cds NA coding protein psRNATarget
NM_001136683.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  |=||||||||=|=|||||||||||
targets:1560   AUGAUCAAGUUUUACACAUAUGAU   1583

2.5 Zea mays uncharacterized LOC100191249 (LOC100191249), mRNA NA coding protein psRNATarget
BT067609.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  |=||||||||=|=|||||||||||
targets:2145   AUGAUCAAGUUUUACACAUAUGAU   2168

2.5 Zea mays full-length cDNA clone ZM_BFc0097K11 mRNA, complete cds NA coding protein psRNATarget
XM_020541829.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  |=||||||||=|=|||||||||||
targets:2666   AUGAUCAAGUUUUACACAUAUGAU   2689

2.5 PREDICTED: Zea mays uncharacterized LOC100191249 (LOC100191249), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549976.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  |*||||||||=|||||||||||=|
targets:5233   AGGAUCAAGUUUCACACAUAUGGU   5256

2.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein (LOC100501588), transcript variant X1, mRNA NA coding protein psRNATarget
EZ105285.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*||*|||||||||||||||||||
targets:58   GGGACCAAGUCUCACACAUAUGAU   81

0.0 TSA: Zea mays contig40942, mRNA sequence NA coding protein psRNATarget
EZ108461.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*||*|||||||||||||||||||
targets:49   GGGACCAAGUCUCACACAUAUGAU   72

0.0 TSA: Zea mays contig44120, mRNA sequence NA coding protein psRNATarget
HI409359.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*||*|||||||||||||||||||
targets:18   GGGACCAAGUCUCACACAUAUGAU   41

0.0 Sequence 7484 from Patent EP2074227 NA coding protein psRNATarget
JB169820.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*||*|||||||||||||||||||
targets:18   GGGACCAAGUCUCACACAUAUGAU   41

0.0 Sequence 7484 from Patent EP2559767 NA coding protein psRNATarget
LQ241489.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*||*|||||||||||||||||||
targets:18   GGGACCAAGUCUCACACAUAUGAU   41

0.0 Sequence 7484 from Patent EP2985353 NA coding protein psRNATarget
EZ111999.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*||||||*|||||||||||||||
targets:104   GGGAUCAAAUCUCACACAUAUGAU   127

1.0 TSA: Zea mays contig47660, mRNA sequence NA coding protein psRNATarget
EU940868.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*||*|||||||||||||||||||
targets:668   GGGACCAAGUCUCACACAUAUGAU   691

0.0 Zea mays clone 1165273 mRNA sequence NA coding protein psRNATarget
EU941463.1
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*||*|||||||||=|||||||||
targets:599   GGGACCAAGUCUCAUACAUAUGAU   622

1.5 Zea mays clone 1454284 mRNA sequence NA coding protein psRNATarget
XM_008667210.2
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*||*||||||||||||||=||||
targets:739   GGGACCAAGUCUCACACAUGUGAU   762

1.5 PREDICTED: Zea mays uncharacterized LOC103644022 (LOC103644022), mRNA NA coding protein psRNATarget
XM_008658973.2
ncRNA:24   UGCUAGUUCAGAGUGUGUAUACUA   1
  =*|||=||||||||||||*|||||
targets:1491   GAGAUUAAGUCUCACACACAUGAU   1514

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g56310 (LOC103636618), mRNA NA coding protein psRNATarget
XM_008676057.2
ncRNA:24   UGC-UAGUUCAGAGUGUGUAUACUA   1
  *||-|||||*|=|||||||||||||
targets:2219   CCGCAUCAAAUUUCACACAUAUGAU   2243

2.0 PREDICTED: Zea mays F-box/LRR-repeat protein 17-like (LOC103650468), mRNA NA coding protein psRNATarget
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