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BaseInfo

ncRNA ID	novel_zma_miR1333
Species	Zea mays
Class	miRNA
Genome position	Chr8:88359231-88359426 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287165
Length	24
Mature sequence(if miRNA)	173 - UUUAUUUAGAGAACUGUUGGAGAA - 196
Stem-loop(if miRNA)	--  A                 UAGG  G   U    ---U     -     U  A   AAAAAAUAAGU   --AA       AUAAU    -   ----   U   CU CAAUAGUUCUCUGAAUA    UU UAA UUUG    UUUGU AUCUA CC CAU           CAU    AAACUAU     GCAG UCA    ACA A   || |||||||||||||||||    || ||| ||||    ||||| ||||| || |||           |||    |||||||     |||| |||    |||   GA GUUGUCAAGAGAUUUAU    AA AUU AAAU    GAACA UAGAU GG GUA           GUA    UUUGGUA     CGUU AGU    UGU U AA  G                 UUGA  G   U    UGUU     G     U  A   -AAAGAGAGAU   AACC       --AAU    G   GAUU   U
Stem-loop sequence	CUACAAUAGUUCUCUGAAUAUAGGUUGUAAUUUUGUUUUGUAUCUAUCCACAUAAAAAAUAAGUCAUAAAAACUAUAUAAUGCAGUCAACAUAUUUGUUUAGUGAGUUGCUAAAUGGUUUCCAAAUGUAGAGAGAAAAUGAGGUUAGAUGACAAGUUGUUAAAUUUAGAAAGUUUAUUUAGAGAACUGUUGGAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548642.1	ncRNA:24   AAGAGGUUGUCAAGAGAUUUAUUU   1   |||||||||||||||||||||=|| targets:2773   UUCUCCAACAGUUCUCUAAAUGAA   2796 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   AAGAGGUUGUCAAGAGAUUUAUUU   1   |||||||||||||||||||||=|| targets:2737   UUCUCCAACAGUUCUCUAAAUGAA   2760 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   AAGAGGUUGUCAAGAGAUUUAUUU   1   |||||||||||||||||||||=|| targets:2527   UUCUCCAACAGUUCUCUAAAUGAA   2550 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   AAGAGGUUGUCAAGAGAUUUAUUU   1   |||||||||||||||||||||=|| targets:2483   UUCUCCAACAGUUCUCUAAAUGAA   2506 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT054396.1	ncRNA:24   AAGAGGUUGUCAAGAGAUUUAUUU   1   |||||||||||||||||||||=|| targets:1330   UUCUCCAACAGUUCUCUAAAUGAA   1353 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0030F12 mRNA, complete cds	NA	coding protein	psRNATarget
BT063131.1	ncRNA:24   AAGAGGUUGUCAAGAGAUUUAUUU   1   ||||||||=|||||||||||||*| targets:2041   UUCUCCAAUAGUUCUCUAAAUAUA   2064 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0029C06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675593.2	ncRNA:24   AAGAGGUUGUCAAGAGAUUUAUUU   1   ||||||||=|||||||||||||*| targets:1817   UUCUCCAAUAGUUCUCUAAAUAUA   1840 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103649908 (LOC103649908), mRNA	NA	coding protein	psRNATarget
XM_008671305.2	ncRNA:24   AAGAGGUUGUCAAGAGAUUUAUUU   1   ||||||||=|||||||||||||*| targets:1298   UUCUCCAAUAGUUCUCUAAAUAUA   1321 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103646598), mRNA	NA	coding protein	psRNATarget
EZ085047.1	ncRNA:24   AAGAGGUUGUCAAGAGAUUUAUUU   1   *||*|||||||||||||||||=|| targets:49   CUCACCAACAGUUCUCUAAAUGAA   72 Target Full Sequence	1.5	TSA: Zea mays contig20691, mRNA sequence	NA	coding protein	psRNATarget