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BaseInfo

ncRNA ID	novel_zma_miR1330
Species	Zea mays
Class	miRNA
Genome position	Chr8:62381467-62381590 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089713;SRR2287160;SRR2287161;SRR2287162;SRR2089702;SRR2089708
Length	24
Mature sequence(if miRNA)	101 - AAUCUGACACAAACGAACAAGGCC - 124
Stem-loop(if miRNA)	--               CU      AUGA   -     G   UCUAA    A   UU  UCU     A   CUUUGUUCGUUUGUG  GGAUUG    AUC GGAAU GUU     ACGG UUG  UC   AAUUU U   |||||||||||||||  ||||||    ||| ||||| |||     |||| |||  ||   |||||   GGAACAAGCAAACAC  UCUAAC    UGG CUUUA CAA     UGUC GAU  AG   UUAAA A CC               AG      ---G   A     G   -----    -   -U  -UU     U
Stem-loop sequence	CUUUGUUCGUUUGUGCUGGAUUGAUGAAUCGGAAUGGUUUCUAAACGGAUUGUUUCUCUAAUUUAUAUAAAUUUUGAUUAGCUGUAACGAUUUCAGGUGCAAUCUGACACAAACGAACAAGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238000.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:1   GGCCUUGUUCGUUUGUGUCGGAUU   24 Target Full Sequence	1.5	Sequence 3995 from Patent EP2985353	NA	coding protein	psRNATarget
JB166331.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:1   GGCCUUGUUCGUUUGUGUCGGAUU   24 Target Full Sequence	1.5	Sequence 3995 from Patent EP2559767	NA	coding protein	psRNATarget
HI405870.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:1   GGCCUUGUUCGUUUGUGUCGGAUU   24 Target Full Sequence	1.5	Sequence 3995 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238091.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:10   GGCCUUGUUCGUUUGUGUCGGAUU   33 Target Full Sequence	1.5	Sequence 4086 from Patent EP2985353	NA	coding protein	psRNATarget
JB166422.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:10   GGCCUUGUUCGUUUGUGUCGGAUU   33 Target Full Sequence	1.5	Sequence 4086 from Patent EP2559767	NA	coding protein	psRNATarget
HI405961.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:10   GGCCUUGUUCGUUUGUGUCGGAUU   33 Target Full Sequence	1.5	Sequence 4086 from Patent EP2074227	NA	coding protein	psRNATarget
HI405928.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:11   GGCCUUGUUCGUUUGUGUCGGAUU   34 Target Full Sequence	1.5	Sequence 4053 from Patent EP2074227	NA	coding protein	psRNATarget
JB166392.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:11   GGCCUUGUUCGUUUGUGUCGGAUU   34 Target Full Sequence	1.5	Sequence 4056 from Patent EP2559767	NA	coding protein	psRNATarget
HI405934.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:11   GGCCUUGUUCGUUUGUGUCGGAUU   34 Target Full Sequence	1.5	Sequence 4059 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238064.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:11   GGCCUUGUUCGUUUGUGUCGGAUU   34 Target Full Sequence	1.5	Sequence 4059 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238058.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:11   GGCCUUGUUCGUUUGUGUCGGAUU   34 Target Full Sequence	1.5	Sequence 4053 from Patent EP2985353	NA	coding protein	psRNATarget
JB166395.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:11   GGCCUUGUUCGUUUGUGUCGGAUU   34 Target Full Sequence	1.5	Sequence 4059 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238061.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:11   GGCCUUGUUCGUUUGUGUCGGAUU   34 Target Full Sequence	1.5	Sequence 4056 from Patent EP2985353	NA	coding protein	psRNATarget
JB166389.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:11   GGCCUUGUUCGUUUGUGUCGGAUU   34 Target Full Sequence	1.5	Sequence 4053 from Patent EP2559767	NA	coding protein	psRNATarget
HI405931.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:11   GGCCUUGUUCGUUUGUGUCGGAUU   34 Target Full Sequence	1.5	Sequence 4056 from Patent EP2074227	NA	coding protein	psRNATarget
HI405906.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4031 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238040.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4035 from Patent EP2985353	NA	coding protein	psRNATarget
JB166366.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4030 from Patent EP2559767	NA	coding protein	psRNATarget
JB166371.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4035 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238035.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4030 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238036.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4031 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238044.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4039 from Patent EP2985353	NA	coding protein	psRNATarget
JB166375.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4039 from Patent EP2559767	NA	coding protein	psRNATarget
HI405905.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4030 from Patent EP2074227	NA	coding protein	psRNATarget
HI405910.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4035 from Patent EP2074227	NA	coding protein	psRNATarget
HI405914.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4039 from Patent EP2074227	NA	coding protein	psRNATarget
JB166368.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4032 from Patent EP2559767	NA	coding protein	psRNATarget
HI405907.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4032 from Patent EP2074227	NA	coding protein	psRNATarget
JB166367.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4031 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238037.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:12   GGCCUUGUUCGUUUGUGUCGGAUU   35 Target Full Sequence	1.5	Sequence 4032 from Patent EP2985353	NA	coding protein	psRNATarget
EZ056395.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:35   GGCCUUGUUCGUUUGUGUCGGAUU   58 Target Full Sequence	1.5	TSA: Zea mays contig57517, mRNA sequence	NA	coding protein	psRNATarget
AY105834.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:756   GGCCUUGUUCGUUUGUGUCGGAUU   779 Target Full Sequence	1.5	Zea mays PCO093864 mRNA sequence	NA	coding protein	psRNATarget
XM_008673797.2	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:838   GGCCUUGUUCGUUUGUGUCGGAUU   861 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100278465 (LOC100278465), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001111367.2	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:1094   GGCCUUGUUCGUUUGUGUCGGAUU   1117 Target Full Sequence	1.5	Zea mays Ferredoxin-6, chloroplastic (pco072676(750)), mRNA	NA	coding protein	psRNATarget
BT019200.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:942   GGCCUUGUUCGUUUGUGUCGGAUU   965 Target Full Sequence	1.5	Zea mays clone Contig873.F mRNA sequence	NA	coding protein	psRNATarget
NM_001196885.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:1188   GGCCUUGUUCGUUUGUGUCGGAUU   1211 Target Full Sequence	1.5	Zea mays Protein kinase superfamily protein (LOC100502407), mRNA	NA	coding protein	psRNATarget
BT088026.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:1188   GGCCUUGUUCGUUUGUGUCGGAUU   1211 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0366I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT068430.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:454   GGCCUUGUUCGUUUGUGUCGGAUU   477 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647453.2	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:3271   GGCCUUGUUCGUUUGUGUCGGAUU   3294 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647452.2	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:3259   GGCCUUGUUCGUUUGUGUCGGAUU   3282 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539404.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:3426   GGCCUUGUUCGUUUGUGUCGGAUU   3449 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539406.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:3444   GGCCUUGUUCGUUUGUGUCGGAUU   3467 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020539386.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:3461   GGCCUUGUUCGUUUGUGUCGGAUU   3484 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539392.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:3479   GGCCUUGUUCGUUUGUGUCGGAUU   3502 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539417.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:3729   GGCCUUGUUCGUUUGUGUCGGAUU   3752 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020538731.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |||||||||||||||||||=|||| targets:5239   GGCCUUGUUCGUUUGUGUCGGAUU   5262 Target Full Sequence	1.5	PREDICTED: Zea mays UDP-glucose:glycoprotein glucosyltransferase (LOC103627875), mRNA	NA	coding protein	psRNATarget
EZ517098.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   ||=||||||||||||||||=|||| targets:98   GGUCUUGUUCGUUUGUGUCGGAUU   121 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL501Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
BT041125.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   ||=||||||||||||||||=|||| targets:1262   GGUCUUGUUCGUUUGUGUCGGAUU   1285 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0177J19 mRNA, complete cds	NA	coding protein	psRNATarget
BT083852.2	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   ||*||||||||||||||||=|||| targets:354   GGACUUGUUCGUUUGUGUCGGAUU   377 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0047A08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676360.2	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   ||*||||||||||||||||=|||| targets:1822   GGGCUUGUUCGUUUGUGUCGGAUU   1845 Target Full Sequence	1.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676377.2	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   ||*||||||||||||||||=|||| targets:1896   GGGCUUGUUCGUUUGUGUCGGAUU   1919 Target Full Sequence	1.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676366.2	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   ||*||||||||||||||||=|||| targets:1914   GGGCUUGUUCGUUUGUGUCGGAUU   1937 Target Full Sequence	1.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008676374.2	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   ||*||||||||||||||||=|||| targets:1990   GGGCUUGUUCGUUUGUGUCGGAUU   2013 Target Full Sequence	1.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ238065.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   **|||||||||||||||||=|||| targets:7   AACCUUGUUCGUUUGUGUCGGAUU   30 Target Full Sequence	1.5	Sequence 4060 from Patent EP2985353	NA	coding protein	psRNATarget
JB166396.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   **|||||||||||||||||=|||| targets:7   AACCUUGUUCGUUUGUGUCGGAUU   30 Target Full Sequence	1.5	Sequence 4060 from Patent EP2559767	NA	coding protein	psRNATarget
HI405935.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   **|||||||||||||||||=|||| targets:7   AACCUUGUUCGUUUGUGUCGGAUU   30 Target Full Sequence	1.5	Sequence 4060 from Patent EP2074227	NA	coding protein	psRNATarget
BT035367.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   **|||||||||||||||||=|||| targets:1245   AACCUUGUUCGUUUGUGUCGGAUU   1268 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138328.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   **|||||||||||||||||=|||| targets:1245   AACCUUGUUCGUUUGUGUCGGAUU   1268 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA	NA	coding protein	psRNATarget
EU972216.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   **|||||||||||||||||=|||| targets:1263   AACCUUGUUCGUUUGUGUCGGAUU   1286 Target Full Sequence	1.5	Zea mays clone 377576 mRNA sequence	NA	coding protein	psRNATarget
NM_001177010.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   ||=|||*||||||||||||=|||| targets:1086   GGUCUUAUUCGUUUGUGUCGGAUU   1109 Target Full Sequence	2.5	Zea mays DRE-binding protein 4 (DBP4), mRNA	NA	coding protein	psRNATarget
FJ805752.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   ||=|||*||||||||||||=|||| targets:1086   GGUCUUAUUCGUUUGUGUCGGAUU   1109 Target Full Sequence	2.5	Zea mays DRE-binding protein 4 (DBP4) mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547654.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |*|=|||||||||||||||=|||| targets:4340   GACUUUGUUCGUUUGUGUCGGAUU   4363 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100279517 (LOC100279517), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU977040.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   |*||||||||||||||*||||||| targets:594   GUCCUUGUUCGUUUGUAUCAGAUU   617 Target Full Sequence	1.5	Zea mays clone 997067 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB166398.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   *|=|*|*||||||||||||=|||| targets:3   AGUCGUUUUCGUUUGUGUCGGAUU   26 Target Full Sequence	2.5	Sequence 4062 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238067.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   *|=|*|*||||||||||||=|||| targets:3   AGUCGUUUUCGUUUGUGUCGGAUU   26 Target Full Sequence	2.5	Sequence 4062 from Patent EP2985353	NA	coding protein	psRNATarget
HI405937.1	ncRNA:24   CCGGAACAAGCAAACACAGUCUAA   1   *|=|*|*||||||||||||=|||| targets:3   AGUCGUUUUCGUUUGUGUCGGAUU   26 Target Full Sequence	2.5	Sequence 4062 from Patent EP2074227	NA	coding protein	psRNATarget