Search result

BaseInfo

ncRNA ID	ath-miRf10021-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - CUACUCGACCUCGGGGUCGAGUGG - NA
Stem-loop(if miRNA)	G   A                      -AU  GA     UGAUGGU       UGGGAUGAAGACA         GG        ----     G  GA GU AAG CACUCGACCUCGGGGUCGAGUG   GU  UCGAG       CAGGUGA             CUCGACCUC  GGUCGAGU    GAUGU GU  A || ||| ||||||||||||||||||||||   ||  |||||       |||||||             |||||||||  ||||||||    ||||| || CA UUU GUGAGCUGGGGCUCCAGCUCAU   CG  AGUUC       GUCUACU             GAGCUGGGG  CCAGCUCA    CUGUA UA  G   G   G                      CCU  -A     UAGAGUU       -------------         GA        UCUC     G  AU
Stem-loop sequence	GUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGGUGAAGUAAUGAUGUCCUCUACUCGACCAGGGGGUCGAGUCAUCUGUUGAGAUCUUGAAGCUCCUACUCGACCUCGGGGUCGAGUGGUUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183042.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   ||||||||||*||||||||||||| targets:1526   CCACUCGACCACGAGGUCGAGUAG   1549 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   |||||||||||*|||||||||||| targets:763   CCACUCGACCCAGAGGUCGAGUAG   786 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   |||||||||||||*|||||||||| targets:489   CCACUCGACCCCGUGGUCGAGUAG   512 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   ||||||||||||*||||||||||| targets:1104   CCACUCGACCCCCAGGUCGAGUAG   1127 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   *|||||||||||||||||||*||| targets:1059   GCACUCGACCCCGAGGUCGACUAG   1082 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY227642.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   ||||||||||||||||||||||=* targets:854   CCACUCGACCCCGAGGUCGAGUGC   877 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   =|||||||||||||||||||||=* targets:1617   UCACUCGACCCCGAGGUCGAGUGU   1640 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   |=||||||||||*||||||||||* targets:187   CUACUCGACCCCCAGGUCGAGUAA   210 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
EF183194.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   ||||||||||*|*||||||||||| targets:449   CCACUCGACCACCAGGUCGAGUAG   472 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   |||*||*||||||*|||||||||| targets:169   CCAGUCAACCCCGUGGUCGAGUAG   192 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   |||*||*||||||*|||||||||| targets:544   CCAGUCAACCCCGUGGUCGAGUAG   567 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:24   GGUGAGCUGGGGCUCCAGCUCAUC   1   |||*||*||||||*|||||||||| targets:544   CCAGUCAACCCCGUGGUCGAGUAG   567 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget