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BaseInfo

ncRNA ID	novel_zma_miR1325
Species	Zea mays
Class	miRNA
Genome position	Chr2:141256556-141256609 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - UUCCACUGGCGGUUUUGUUACACC - 24
Stem-loop(if miRNA)	--   U   CC               C   UGU ACA  AACCGCCAGUGGAAA U   ||| |||  ||||||||||||||| A   ACA UGU  UUGGCGGUCACCUUU A CC   U   -U               A
Stem-loop sequence	UGUUACACCAACCGCCAGUGGAAACUAAAUUUCCACUGGCGGUUUUGUUACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ101180.1	ncRNA:24   CCACAUUGUUUUGGCGGUCACCUU   1   |||||||||=|||||*|||||||| targets:26   GGUGUAACAGAACCGACAGUGGAA   49 Target Full Sequence	2.5	TSA: Zea mays contig36836, mRNA sequence	NA	coding protein	psRNATarget
NM_001150001.1	ncRNA:24   CCACAUUGUUUUGGCGGUCACCUU   1   ||*||||=|||||||||||||*|| targets:654   GGCGUAAUAAAACCGCCAGUGAAA   677 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA	NA	coding protein	psRNATarget
EU960305.1	ncRNA:24   CCACAUUGUUUUGGCGGUCACCUU   1   ||*||||=|||||||||||||*|| targets:654   GGCGUAAUAAAACCGCCAGUGAAA   677 Target Full Sequence	2.5	Zea mays clone 223391 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU944461.1	ncRNA:24   CCA----CAUUGUUUUGGCGGUCACCUU   1   |||----||||=|||||||||||||*|| targets:891   GGUCGACGUAAUAAAACCGCCAGUGAAA   918 Target Full Sequence	2.5	Zea mays clone 219441 mRNA sequence	NA	coding protein	psRNATarget
EU954222.1	ncRNA:24   CCA----CAUUGUUUUGGCGGUCACCUU   1   |||----||||=|||||||||||||*|| targets:867   GGUCGACGUAAUAAAACCGCCAGUGCAA   894 Target Full Sequence	2.5	Zea mays clone 1458779 hemolysin-III related family protein mRNA, complete cds	NA	coding protein	psRNATarget
BT069194.2	ncRNA:24   CCAC--AUUGUUUUGGCGGUCACCUU   1   **||--|*|=|||||||||||||||| targets:842   UUUGCUUUAUAAAACCGCCAGUGGAA   867 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069194.2	ncRNA:24   CCAC---AUUGUUUUGGCGGUCACCUU   1   |||*---|||*|||||||||||||*|| targets:929   GGUUCCUUAAGAAAACCGCCAGUGAAA   955 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176701.1	ncRNA:24   CCAC--AUUGUUUUGGCGGUCACCUU   1   **||--|*|=|||||||||||||||| targets:842   UUUGCUUUAUAAAACCGCCAGUGGAA   867 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA	NA	coding protein	psRNATarget
NM_001176701.1	ncRNA:24   CCAC---AUUGUUUUGGCGGUCACCUU   1   |||*---|||*|||||||||||||*|| targets:929   GGUUCCUUAAGAAAACCGCCAGUGAAA   955 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA	NA	coding protein	psRNATarget
EU975266.1	ncRNA:24   CCACAUUGUUUUGGCGGUCACCUU   1   ***|*||||=|||*|||||||||| targets:5   AACGAAACAGAACGGCCAGUGGAA   28 Target Full Sequence	2.5	Zea mays clone 486044 mRNA sequence	NA	coding protein	psRNATarget
XM_008676448.2	ncRNA:24   CCACAUUGUUUUGGCGGUCACCUU   1   ***|*||||=|||*|||||||||| targets:10   AACGAAACAGAACGGCCAGUGGAA   33 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103650853), mRNA	NA	coding protein	psRNATarget