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BaseInfo

ncRNA ID novel_zma_miR1315
Species Zea mays
Class miRNA
Genome position Chr8:105396488-105396568 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287031;SRR2287159;SRR2287160;SRR2287163;SRR2647391;SRR1997865;SRR2089700;SRR2089701
Length 21
Mature sequence(if miRNA) 1 - AUGGUGCAUUGACUUGGUCAA - 21
Stem-loop(if miRNA) -- U                        AG       A  
  G CCAAGUCAAUGCAUCAUUGCCCCU  UUUUGCC UCA
  | ||||||||||||||||||||||||  ||||||| ||A
  C GGUUCAGUUACGUGGUAACGGGGA  GAAGCGG AGA
AA U                        CG       A  
Stem-loop sequence GUCCAAGUCAAUGCAUCAUUGCCCCUAGUUUUGCCAUCAAAGAAGGCGAAGGCAGGGGCAAUGGUGCAUUGACUUGGUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY111043.1
ncRNA:21   AACUGGUUCAGUUACGUGGUA   1
  **|||||**||||||||||||
targets:814   GAGACCACAUCAAUGCACCAU   834

2.5 Zea mays CL11409_1 mRNA sequence NA coding protein psRNATarget
AY110908.1
ncRNA:21   AACUGGUUCAGUUACGUGGUA   1
  **|||||**||||||||||||
targets:778   GAGACCACAUCAAUGCACCAU   798

2.5 Zea mays CL37059_1 mRNA sequence NA coding protein psRNATarget