Search result

BaseInfo

ncRNA ID	novel_zma_miR1310
Species	Zea mays
Class	miRNA
Genome position	Chr10:149953935-149954012 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089699;SRR2089702;SRR2089706;SRR2089708
Length	21
Mature sequence(if miRNA)	58 - AGGGGAUUAGAGGGGCUAGAA - 78
Stem-loop(if miRNA)	-   -     A      C       AC           A  AGG GGAUU GAGGGG UAGAAUC  UUUCUUAUUCA A  ||| ||||| |||||| |||||||  |||||||||||  UUC CCUAA CUCCCC AUCUUAG  GAAGAAUAAGU A U   A     C      A       GA           U
Stem-loop sequence	AGGGGAUUAGAGGGGCUAGAAUCACUUUCUUAUUCAAAAUUGAAUAAGAAGAGGAUUCUAACCCCUCCAAUCCACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166281.1	ncRNA:21   AAGAUCGGGGAGAUUAGGGGA   1   ||=|||||||||||||||||| targets:199   UUUUAGCCCCUCUAAUCCCCU   219 Target Full Sequence	1.0	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:21   AAGAUCGGGGAGAUUAGGGGA   1   ||=|||||||||||||||||| targets:199   UUUUAGCCCCUCUAAUCCCCU   219 Target Full Sequence	1.0	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:21   AAGAUCGGGGAGAUUAGGGGA   1   ||=|||||||||||||||||| targets:199   UUUUAGCCCCUCUAAUCCCCU   219 Target Full Sequence	1.0	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AAGAUCGGGGAGAUUAGGGGA   1   ||=|||||||||*|||||||| targets:3497   UUUUAGCCCCUCCAAUCCCCU   3517 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AAGAUCGGGGAGAUUAGGGGA   1   ||=|||||||||*|||||||| targets:3532   UUUUAGCCCCUCCAAUCCCCU   3552 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:21   AAGAUCGGGGAGAUUAGGGGA   1   **=|||||||||*|||||||| targets:329   GCUUAGCCCCUCCAAUCCCCU   349 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
EZ089372.1	ncRNA:21   AAGAUCGGGGAGAUUAGGGGA   1   *||*|*=|||||||||||||| targets:71   CUCAAUUCCCUCUAAUCCCCU   91 Target Full Sequence	3.0	TSA: Zea mays contig25018, mRNA sequence	NA	coding protein	psRNATarget