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BaseInfo

ncRNA ID novel_zma_miR1306
Species Zea mays
Class miRNA
Genome position Chr1:176355006-176355153 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089712;SRR2089713
Length 21
Mature sequence(if miRNA) 128 - AGACGUUAGAUCUAAGAUGGA - 148
Stem-loop(if miRNA) --     A             A        C             --A      CC    -----       -A  AGG
  UAUCU AGAUCUAACGUCU UGAUUGCU UGUAUAUUUUGCA   AAUGCC  UCCA     GCCUCCA  GC   G
  ||||| ||||||||||||| |||||||| |||||||||||||   ||||||  ||||     |||||||  ||   U
  GUAGA UCUAGAUUGCAGA ACUAACGA ACAUAUAAAACGU   UUGUGG  AGGU     UGGAGGU  UG   A
AG     A             A        U             GUA      -A    GACAA       AG  AAC
Stem-loop sequence UAUCUAAGAUCUAACGUCUAUGAUUGCUCUGUAUAUUUUGCAAAAUGCCCCUCCAGCCUCCAAGCAGGGUACAAGUGAUGGAGGUAACAGUGGAAGGUGUUAUGUGCAAAAUAUACAUAGCAAUCAAAGACGUUAGAUCUAAGAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664116.2
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *==||||||||||||||||||
targets:681   CUUAUCUUAGAUCUAACGUCU   701

1.0 PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679080.2
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:2028   CUCAUUUUAGAUCUAACGUCU   2048

1.0 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679083.2
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:2019   CUCAUUUUAGAUCUAACGUCU   2039

1.0 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA NA coding protein psRNATarget
BT018927.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:1051   CUCAUUUUAGAUCUAACGUCU   1071

1.0 Zea mays clone Contig55.F mRNA sequence NA coding protein psRNATarget
BT087210.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:343   CUCAUUUUAGAUCUAACGUCU   363

1.0 Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds NA coding protein psRNATarget
BT087938.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:871   CUCAUUUUAGAUCUAACGUCU   891

1.0 Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds NA coding protein psRNATarget
BT037068.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:906   CUCAUUUUAGAUCUAACGUCU   926

1.0 Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds NA coding protein psRNATarget
LQ235412.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:21   CUCAUUUUAGAUCUAACGUCU   41

1.0 Sequence 1407 from Patent EP2985353 NA coding protein psRNATarget
HI403282.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:21   CUCAUUUUAGAUCUAACGUCU   41

1.0 Sequence 1407 from Patent EP2074227 NA coding protein psRNATarget
JB163743.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:21   CUCAUUUUAGAUCUAACGUCU   41

1.0 Sequence 1407 from Patent EP2559767 NA coding protein psRNATarget
HI403383.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:17   CUCAUUUUAGAUCUAACGUCU   37

1.0 Sequence 1508 from Patent EP2074227 NA coding protein psRNATarget
LQ235513.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:17   CUCAUUUUAGAUCUAACGUCU   37

1.0 Sequence 1508 from Patent EP2985353 NA coding protein psRNATarget
JB163844.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:17   CUCAUUUUAGAUCUAACGUCU   37

1.0 Sequence 1508 from Patent EP2559767 NA coding protein psRNATarget
JB163685.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:17   CUCAUUUUAGAUCUAACGUCU   37

1.0 Sequence 1349 from Patent EP2559767 NA coding protein psRNATarget
HI403224.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:17   CUCAUUUUAGAUCUAACGUCU   37

1.0 Sequence 1349 from Patent EP2074227 NA coding protein psRNATarget
LQ235354.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||||
targets:17   CUCAUUUUAGAUCUAACGUCU   37

1.0 Sequence 1349 from Patent EP2985353 NA coding protein psRNATarget
BT016456.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *||*|||||||||||||||||
targets:46   CCCUUCUUAGAUCUAACGUCU   66

1.0 Zea mays clone Contig289 mRNA sequence NA coding protein psRNATarget
EU948462.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *==||=|||||||||||||||
targets:440   CUUAUUUUAGAUCUAACGUCU   460

2.0 Zea mays clone 377988 mRNA sequence NA coding protein psRNATarget
HI409543.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||=|
targets:21   CUCAUUUUAGAUCUAACGUUU   41

2.5 Sequence 7668 from Patent EP2074227 NA coding protein psRNATarget
JB170004.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||=|
targets:21   CUCAUUUUAGAUCUAACGUUU   41

2.5 Sequence 7668 from Patent EP2559767 NA coding protein psRNATarget
LQ241673.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||||=|
targets:21   CUCAUUUUAGAUCUAACGUUU   41

2.5 Sequence 7668 from Patent EP2985353 NA coding protein psRNATarget
LQ235514.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=||||||||||=||||
targets:17   CUCAUUUUAGAUCUAAUGUCU   37

2.5 Sequence 1509 from Patent EP2985353 NA coding protein psRNATarget
JB163845.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=||||||||||=||||
targets:17   CUCAUUUUAGAUCUAAUGUCU   37

2.5 Sequence 1509 from Patent EP2559767 NA coding protein psRNATarget
HI403384.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=||||||||||=||||
targets:17   CUCAUUUUAGAUCUAAUGUCU   37

2.5 Sequence 1509 from Patent EP2074227 NA coding protein psRNATarget
EZ113957.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  |||||||*|||||||||*|||
targets:232   UCCAUCUCAGAUCUAACUUCU   252

2.5 TSA: Zea mays contig49618, mRNA sequence NA coding protein psRNATarget
EU955849.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *|||||||*|||||||||||*
targets:1978   ACCAUCUUUGAUCUAACGUCA   1998

2.5 Zea mays clone 1548842 mRNA sequence NA coding protein psRNATarget
XM_008654898.2
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||||||||||*|||
targets:6   CUCAUUUUAGAUCUAACAUCU   26

2.5 PREDICTED: Zea mays anthocyanidin 3-O-glucosyltransferase 2 (LOC103633204), mRNA NA coding protein psRNATarget
LQ235548.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||*|||||||||||
targets:28   CUCAUUUUAAAUCUAACGUCU   48

2.5 Sequence 1543 from Patent EP2985353 NA coding protein psRNATarget
HI403418.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||*|||||||||||
targets:28   CUCAUUUUAAAUCUAACGUCU   48

2.5 Sequence 1543 from Patent EP2074227 NA coding protein psRNATarget
JB163879.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=|||=|||*|||||||||||
targets:28   CUCAUUUUAAAUCUAACGUCU   48

2.5 Sequence 1543 from Patent EP2559767 NA coding protein psRNATarget
HI406034.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=*||=|*|||||||||||||
targets:46   CUGAUUUGAGAUCUAACGUCU   66

3.0 Sequence 4159 from Patent EP2074227 NA coding protein psRNATarget
JB166495.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=*||=|*|||||||||||||
targets:46   CUGAUUUGAGAUCUAACGUCU   66

3.0 Sequence 4159 from Patent EP2559767 NA coding protein psRNATarget
LQ238164.1
ncRNA:21   AGGUAGAAUCUAGAUUGCAGA   1
  *=*||=|*|||||||||||||
targets:46   CUGAUUUGAGAUCUAACGUCU   66

3.0 Sequence 4159 from Patent EP2985353 NA coding protein psRNATarget
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