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BaseInfo

ncRNA ID	novel_zma_miR1301
Species	Zea mays
Class	miRNA
Genome position	Chr8:18826905-18826958 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	31 - UGACUAAAAGGGACUAAAGUAGGA - 54
Stem-loop(if miRNA)	-UAA    A      --         A     ACUU AGUUCU  UUAGUCACC A     |||| ||||||  ||||||||| G     UGAA UCAGGG  AAUCAGUGG G AGGA    A      AA         G
Stem-loop sequence	UAAACUUAAGUUCUUUAGUCACCAAGGGGGUGACUAAAAGGGACUAAAGUAGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001149797.1	ncRNA:24   AGGAUGAAAUCAGGGAAAAUCAGU   1   |||||||||||||=|||||||||| targets:1231   UCCUACUUUAGUCUCUUUUAGUCA   1254 Target Full Sequence	1.5	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   AGGAUGAAAUCAGGGAAAAUCAGU   1   |||||||||||||=|||||||||| targets:1231   UCCUACUUUAGUCUCUUUUAGUCA   1254 Target Full Sequence	1.5	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672208.2	ncRNA:24   AGGAUGAAAUCAGGGAAAAUCAGU   1   |*||||||||||||=||||||||| targets:1529   UACUACUUUAGUCCUUUUUAGUCA   1552 Target Full Sequence	1.5	PREDICTED: Zea mays anthocyanidin 5,3-O-glucosyltransferase (LOC103647700), mRNA	NA	coding protein	psRNATarget
X55314.1	ncRNA:24   AGGAUGAAAUCAGGGAAAAUCAGU   1   ||||||||||*||||||||||*|| targets:479   UCCUACUUUAAUCCCUUUUAGCCA   502 Target Full Sequence	2.5	Zea mays A2 gene	NA	coding protein	psRNATarget
AY111544.1	ncRNA:24   AGGAUGAAAUCAGGGAAAAUCAGU   1   ||||||||||*||||||||||*|| targets:435   UCCUACUUUAAUCCCUUUUAGCCA   458 Target Full Sequence	2.5	Zea mays CL947_1 mRNA sequence	NA	coding protein	psRNATarget
EU970223.1	ncRNA:24   AGGAUGAAAUCAGGGAAAAUCAGU   1   *=*||*|||||||||||||||||| targets:1552   AUAUAGUUUAGUCCCUUUUAGUCA   1575 Target Full Sequence	1.0	Zea mays clone 342396 mRNA sequence	NA	coding protein	psRNATarget
EU945912.1	ncRNA:24   AGGAUGAAAUCAGGGAAAAUCAGU   1   *=*||*||||||||=||||||||| targets:219   AUAUAGUUUAGUCCUUUUUAGUCA   242 Target Full Sequence	2.5	Zea mays clone 289853 mRNA sequence	NA	coding protein	psRNATarget