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BaseInfo

ncRNA ID novel_zma_miR1300
Species Zea mays
Class miRNA
Genome position Chr8:170274421-170274500 [-]
Reference genome RefGen_v4
Source SRR2089710
Length 24
Mature sequence(if miRNA) 57 - GCAAGGAUUUAGAGUGGUUCAGGC - 80
Stem-loop(if miRNA) --G    GA       UG  U        --     CGUAA
   CAAG  UUUAGAG  GU CAGGCCGC  UGGAG     U
   ||||  |||||||  || ||||||||  |||||
   GUUC  GAGUUUC  UA GUUUGGUG  ACCUC     A
UGA    GA       GU  U        UC     UUCCC
Stem-loop sequence GCAAGGAUUUAGAGUGGUUCAGGCCGCUGGAGCGUAAUACCCUUCUCCACUGUGGUUUGUAUUGCUUUGAGAGCUUGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ063125.1
ncRNA:24   CGGACUUGGUGAGAUUUAGGAACG   1
  |||*|||||||||||||||=|||=
targets:45   GCCCGAACCACUCUAAAUCUUUGU   68

2.5 TSA: Zea mays contig64247, mRNA sequence NA coding protein psRNATarget
XM_020545234.1
ncRNA:24   CGGACUUGGUGAGAUUUAGGAACG   1
  |||**||||||||||||||||||=
targets:5009   GCCCAAACCACUCUAAAUCCUUGU   5032

1.0 PREDICTED: Zea mays ABC transporter I family member 1-like (LOC103642079), transcript variant X2, mRNA NA coding protein psRNATarget