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BaseInfo

ncRNA ID	osa-miR395m
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:32621993-32622112 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	100 - GUGAAGUGUUUGGGGGAACUC - 120
Stem-loop(if miRNA)	U    U       G  --G          --A        U  A     CU   A GAGUUCUCC CAAA CACUUCA UA   AUAGCUAGCU   GGCUUCAU GC UUACA  GUU C ||||||||| |||| ||||||| ||   ||||||||||   |||||||| || |||||  ||| CUCAAGGGG GUUU GUGAAGU AU   UGUUGAUCGA   CCGGGGUA CG AGUGU  CAA A          -    -       G  AUA          AAA        -  -     --   A
Stem-loop sequence	GAGUUCUCCUCAAAUCACUUCAGUAGAUAGCUAGCUAGGCUUCAUUGCAUUACACUGUUACAAAACUGUGAGCAUGGGGCCAAAAGCUAGUUGUAUAUAGUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK111395.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||||||||||||||||* targets:318   GAGUUCCCCCAAACACUUCAG   338 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-182-D04, full insert sequence	NA	coding protein	psRNATarget
XM_015775300.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||||||||||||||||* targets:322   GAGUUCCCCCAAACACUUCAG   342 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331934), mRNA	low affinity sulfate transporter 3(LOC4331934)	coding protein	psRNATarget
AK067353.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||*|||||||||||||* targets:112   GAGUUCACCCAAACACUUCAG   132 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013100L12, full insert sequence	NA	coding protein	psRNATarget
XM_015775294.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||*|||||||||||||* targets:529   GAGUUCACCCAAACACUUCAG   549 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X3, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget
XM_015775293.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||*|||||||||||||* targets:2647   GAGUUCACCCAAACACUUCAG   2667 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X2, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget
XM_015775292.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||*|||||||||||||* targets:2776   GAGUUCACCCAAACACUUCAG   2796 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X1, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget

Reference

1	PMID:16117853 "Molecular evolution of the rice miR395 gene family"; Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L; Cell Res. 15:631-638(2005).