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BaseInfo

ncRNA ID	novel_zma_miR1298
Species	Zea mays
Class	miRNA
Genome position	Chr2:148793840-148793915 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647385
Length	24
Mature sequence(if miRNA)	1 - AUCCCCCUCAAUUCAUAUGGAUUG - 24
Stem-loop(if miRNA)	--              GA       UUGACUUGCU    AUU   AUCCAUAUGGAUUG  GGGGAUU          AGGG   G   ||||||||||||||  |||||||          ||||   A   UAGGUAUACUUAAC  CCCCUAA          UCCC   A GU              UC       ---------C    CCA
Stem-loop sequence	AUCCAUAUGGAUUGGAGGGGAUUUUGACUUGCUAGGGAUUGAAACCCCCUCAAUCCCCCUCAAUUCAUAUGGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001348011.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   |||||||||||=|||||||||||| targets:374   CAAUCCAUAUGGAUUGAGGGGGAU   397 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   |||||||||||=|||||||||||| targets:713   CAAUCCAUAUGGAUUGAGGGGGAU   736 Target Full Sequence	1.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   |||||||||||=|||||||||||| targets:976   CAAUCCAUAUGGAUUGAGGGGGAU   999 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   |||||||||||=|||||||||||| targets:1014   CAAUCCAUAUGGAUUGAGGGGGAU   1037 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   |||||||||||=|||||||||||| targets:1559   CAAUCCAUAUGGAUUGAGGGGGAU   1582 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
EU956028.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   ||||||||||||||||||*||||| targets:1472   CAAUCCAUAUGAAUUGAGUGGGAU   1495 Target Full Sequence	1.5	Zea mays clone 1555850 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062929.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   ||||||||||||||||||*||||| targets:1561   CAAUCCAUAUGAAUUGAGUGGGAU   1584 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0008K15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147345.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   ||||||||||||||||||*||||| targets:1662   CAAUCCAUAUGAAUUGAGUGGGAU   1685 Target Full Sequence	1.5	Zea mays uncharacterized LOC100272892 (LOC100272892), mRNA	NA	coding protein	psRNATarget
BT039694.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   ||||||||||||||||||*||||| targets:1662   CAAUCCAUAUGAAUUGAGUGGGAU   1685 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0039F21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   |||||||||||*|||||||||||| targets:3049   CAAUCCAUAUGUAUUGAGGGGGAU   3072 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   ||||||||||*=|||||||||||| targets:230   CAAUCCAUAUAGAUUGAGGGGGAU   253 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
AY110812.1	ncRNA:24   GUUAGGUAUACUUAACUCCCCCUA   1   |||||||||||||||||||||*|* targets:196   CAAUCCAUAUGAAUUGAGGGGAAC   219 Target Full Sequence	2.5	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget