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BaseInfo

ncRNA ID	novel_zma_miR1294
Species	Zea mays
Class	miRNA
Genome position	Chr8:178334309-178334381 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089704;SRR2089706;SRR2089707;SRR2089708
Length	21
Mature sequence(if miRNA)	1 - AGGAUUGAAGGGGCUAAAAUC - 21
Stem-loop(if miRNA)	--       A            CC          CA   AGGAUUG AGGGGCUAAAAU  CUUUCUUAUU  A   ||||||| ||||||||||||  ||||||||||  U   UCCUAAU UCCCUGAUUUUA  GAAAGAAUAA  U UC       C            AA          AU
Stem-loop sequence	AGGAUUGAAGGGGCUAAAAUCCCUUUCUUAUUCAAUUUAAAUAAGAAAGAAAUUUUAGUCCCUCUAAUCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||||||||||* targets:1108   GAUUUUAGCCCCUUCAAUCCC   1128 Target Full Sequence	1.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008682825.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||||||||||* targets:1834   GAUUUUAGCCCCUUCAAUCCC   1854 Target Full Sequence	1.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008682823.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||||||||||* targets:1712   GAUUUUAGCCCCUUCAAUCCC   1732 Target Full Sequence	1.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682824.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||||||||||* targets:1666   GAUUUUAGCCCCUUCAAUCCC   1686 Target Full Sequence	1.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU957690.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||||||||||* targets:1646   GAUUUUAGCCCCUUCAAUCCC   1666 Target Full Sequence	1.0	Zea mays clone 1610264 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682826.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||||||||||* targets:1613   GAUUUUAGCCCCUUCAAUCCC   1633 Target Full Sequence	1.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008682827.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||||||||||* targets:1520   GAUUUUAGCCCCUUCAAUCCC   1540 Target Full Sequence	1.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X5, mRNA	NA	coding protein	psRNATarget
NM_001137538.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||||||||||* targets:1573   GAUUUUAGCCCCUUCAAUCCC   1593 Target Full Sequence	1.0	Zea mays Ycf20-like protein (LOC100192115), mRNA	NA	coding protein	psRNATarget
EU974541.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||||||||||* targets:1474   GAUUUUAGCCCCUUCAAUCCC   1494 Target Full Sequence	1.0	Zea mays clone 452157 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676338.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   *|||||||||||||||||=|| targets:1770   AAUUUUAGCCCCUUCAAUUCU   1790 Target Full Sequence	1.5	PREDICTED: Zea mays probable inactive purple acid phosphatase 16 (LOC103650765), mRNA	NA	coding protein	psRNATarget
XM_020538635.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||||*||=|||||||||| targets:4756   GAUUUUAUCCUCUUCAAUCCU   4776 Target Full Sequence	2.5	PREDICTED: Zea mays tripeptidyl-peptidase 2 (LOC103627523), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647816.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||||*||=|||||||||| targets:4619   GAUUUUAUCCUCUUCAAUCCU   4639 Target Full Sequence	2.5	PREDICTED: Zea mays tripeptidyl-peptidase 2 (LOC103627523), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU945168.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||||*||=|||||||||| targets:1525   GAUUUUAUCCUCUUCAAUCCU   1545 Target Full Sequence	2.5	Zea mays clone 243184 mRNA sequence	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||||||||||*|||||||* targets:3   GAUUUUAGCCCCCUCAAUCCC   23 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||||||||||*||||||* targets:3530   GAUUUUAGCCCCUCCAAUCCC   3550 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||||||||||*||||||* targets:3495   GAUUUUAGCCCCUCCAAUCCC   3515 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   *|||*|||||||||||||||| targets:867   UAUUCUAGCCCCUUCAAUCCU   887 Target Full Sequence	1.0	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   *|||*|||||||||||||||| targets:867   UAUUCUAGCCCCUUCAAUCCU   887 Target Full Sequence	1.0	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
BT036654.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   *|||*|||||||||||||||| targets:1034   UAUUCUAGCCCCUUCAAUCCU   1054 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   *|||*|||||||||||||||| targets:81   UAUUCUAGCCCCUUCAAUCCU   101 Target Full Sequence	1.0	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
HI406069.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   *|||*|||||||||||||||| targets:81   UAUUCUAGCCCCUUCAAUCCU   101 Target Full Sequence	1.0	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
JB166530.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   *|||*|||||||||||||||| targets:81   UAUUCUAGCCCCUUCAAUCCU   101 Target Full Sequence	1.0	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   ||||*||||||||*||||||| targets:4122   GAUUAUAGCCCCUCCAAUCCU   4142 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
EU964521.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:915   GAUUUAAUCCCCUUCAAUCCC   935 Target Full Sequence	3.0	Zea mays clone 279503 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678753.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:899   GAUUUAAUCCCCUUCAAUCCC   919 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100276749), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT062705.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:854   GAUUUAAUCCCCUUCAAUCCC   874 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0335N06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150473.2	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:854   GAUUUAAUCCCCUUCAAUCCC   874 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
BT065224.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:799   GAUUUAAUCCCCUUCAAUCCC   819 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0046E21 mRNA, complete cds	NA	coding protein	psRNATarget
BT069064.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:816   GAUUUAAUCCCCUUCAAUCCC   836 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0160O17 mRNA, complete cds	NA	coding protein	psRNATarget
BT069598.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:848   GAUUUAAUCCCCUUCAAUCCC   868 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0180C20 mRNA, complete cds	NA	coding protein	psRNATarget
EU964415.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:753   GAUUUAAUCCCCUUCAAUCCC   773 Target Full Sequence	3.0	Zea mays clone 278711 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001245881.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:753   GAUUUAAUCCCCUUCAAUCCC   773 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
BT054737.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:184   GAUUUAAUCCCCUUCAAUCCC   204 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
EU961196.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:369   GAUUUAAUCCCCUUCAAUCCC   389 Target Full Sequence	3.0	Zea mays clone 233383 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU942334.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:235   GAUUUAAUCCCCUUCAAUCCC   255 Target Full Sequence	3.0	Zea mays clone 1480331 mRNA sequence	NA	coding protein	psRNATarget
EU963775.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:227   GAUUUAAUCCCCUUCAAUCCC   247 Target Full Sequence	3.0	Zea mays clone 272562 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU960473.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:94   GAUUUAAUCCCCUUCAAUCCC   114 Target Full Sequence	3.0	Zea mays clone 225209 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB166498.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:87   GAUUUAAUCCCCUUCAAUCCC   107 Target Full Sequence	3.0	Sequence 4162 from Patent EP2559767	NA	coding protein	psRNATarget
HI406037.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:87   GAUUUAAUCCCCUUCAAUCCC   107 Target Full Sequence	3.0	Sequence 4162 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238167.1	ncRNA:21   CUAAAAUCGGGGAAGUUAGGA   1   |||||*|*||||||||||||* targets:87   GAUUUAAUCCCCUUCAAUCCC   107 Target Full Sequence	3.0	Sequence 4162 from Patent EP2985353	NA	coding protein	psRNATarget