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BaseInfo

ncRNA ID	novel_zma_miR1293
Species	Zea mays
Class	miRNA
Genome position	Chr1:14080226-14080318 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287031;SRR2287163;SRR2089700
Length	24
Mature sequence(if miRNA)	1 - AUCUAUAUGGAUUGGAGGGGAUUG - 24
Stem-loop(if miRNA)	--    A                     ---U  GUUUAAAUCCAUAU   AUCU UAUGGAUUGGAGGGGAUUGAG    GA              G   |||| |||||||||||||||||||||    ||              A   UGGA AUACCUAACCUUCCUUAAUUU    AU              A UA    -                     UUUA  ACUUCCUAAAACUG
Stem-loop sequence	AUCUAUAUGGAUUGGAGGGGAUUGAGUGAGUUUAAAUCCAUAUGAAGUCAAAAUCCUUCAUAAUUUUUUAAUUCCUUCCAAUCCAUAAGGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658561.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:302   CAAUCCCCUCCAAUCCAUAUGGAU   325 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:1631   CAAUCCCCUCCAAUCCAUAUGGAU   1654 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:1981   CAAUCCCCUCCAAUCCAUAUGGAU   2004 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:1981   CAAUCCCCUCCAAUCCAUAUGGAU   2004 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:23   CAAUCCCCUCCAAUCCAUAUGGAU   46 Target Full Sequence	1.5	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:918   CAAUCCCCUCCAAUCCAUAUGGAU   941 Target Full Sequence	1.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:846   CAAUCCCCUCCAAUCCAUAUGGAU   869 Target Full Sequence	1.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:845   CAAUCCCCUCCAAUCCAUAUGGAU   868 Target Full Sequence	1.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:845   CAAUCCCCUCCAAUCCAUAUGGAU   868 Target Full Sequence	1.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:847   CAAUCCCCUCCAAUCCAUAUGGAU   870 Target Full Sequence	1.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:899   CAAUCCCCUCCAAUCCAUAUGGAU   922 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:700   CAAUCCCCUCCAAUCCAUAUGGAU   723 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||||||||||||||||=||| targets:446   CAAUCCCCUCCAAUCCAUAUGGAU   469 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||=||||||||||||||=||| targets:336   CAAUCUCCUCCAAUCCAUAUGGAU   359 Target Full Sequence	2.5	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||||||=||||||||||=||| targets:977   CAAUCCCCUUCAAUCCAUAUGGAU   1000 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||||||=||||||||||=||| targets:1498   CAAUCCCCUUCAAUCCAUAUGGAU   1521 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||||||=||||||||||=||| targets:1498   CAAUCCCCUUCAAUCCAUAUGGAU   1521 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||||||=||||||||||=||| targets:1484   CAAUCCCCUUCAAUCCAUAUGGAU   1507 Target Full Sequence	2.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||||||=||||||||||=||| targets:1466   CAAUCCCCUUCAAUCCAUAUGGAU   1489 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||||||=||||||||||=||| targets:1422   CAAUCCCCUUCAAUCCAUAUGGAU   1445 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   =|||||||||||||||||||=||| targets:1199   UAAUCCCCUCCAAUCCAUAUGGAU   1222 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   =|||||||||||||||||||=||| targets:1161   UAAUCCCCUCCAAUCCAUAUGGAU   1184 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||=||||||||||||||=||| targets:1009   CAAUCUCCUCCAAUCCAUAUGGAU   1032 Target Full Sequence	2.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||||=||||||||||||=||| targets:837   CAAUCCCUUCCAAUCCAUAUGGAU   860 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
BT055765.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   =||||||=||||||||||||=||| targets:2322   UAAUCCCUUCCAAUCCAUAUGGAU   2345 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0178P09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153131.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   =||||||=||||||||||||=||| targets:2322   UAAUCCCUUCCAAUCCAUAUGGAU   2345 Target Full Sequence	2.5	Zea mays putative protein kinase superfamily protein (LOC100280200), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |=|||||||=||||||||||=||| targets:1699   CGAUCCCCUUCAAUCCAUAUGGAU   1722 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
BT024027.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   =||||||=||||||||||||=||| targets:1644   UAAUCCCUUCCAAUCCAUAUGGAU   1667 Target Full Sequence	2.5	Zea mays clone EL01N0420G12 mRNA sequence	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||*|||||||||||||||||| targets:889   CAAUCACCUCCAAUCCAUAUAGAU   912 Target Full Sequence	1.0	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||*|||||||||||||||||| targets:889   CAAUCACCUCCAAUCCAUAUAGAU   912 Target Full Sequence	1.0	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EZ084135.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   |||||=|*|||||||||||||||| targets:33   CAAUCUCAUCCAAUCCAUAUAGAU   56 Target Full Sequence	2.0	TSA: Zea mays contig19779, mRNA sequence	NA	coding protein	psRNATarget
BT085555.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   =|||||=|||||||||||||*||| targets:1360   UAAUCCUCUCCAAUCCAUAUCGAU   1383 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0032K01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   =||||=|*|=|||||||||||||| targets:1200   UAAUCUCAUUCAAUCCAUAUAGAU   1223 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   =||||=|*|=|||||||||||||| targets:948   UAAUCUCAUUCAAUCCAUAUAGAU   971 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT016973.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ||||||*|||||||*||||||||| targets:58   CAAUCCACUCCAAUACAUAUAGAU   81 Target Full Sequence	2.5	Zea mays clone E04912708E03.c mRNA sequence	NA	coding protein	psRNATarget
EU950357.1	ncRNA:24   GUUAGGGGAGGUUAGGUAUAUCUA   1   ***|=|=|||||||=||||||||| targets:779   AUUUUCUCUCCAAUUCAUAUAGAU   802 Target Full Sequence	2.5	Zea mays clone 490163 mRNA sequence	NA	coding protein	psRNATarget