Search result

BaseInfo

ncRNA ID	novel_zma_miR1292
Species	Zea mays
Class	miRNA
Genome position	Chr8:177261344-177261439 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089712;SRR2089714;SRR5099742;SRR5100248;SRR2089708
Length	21
Mature sequence(if miRNA)	1 - UCUGGAUCGAAGGGGGUUGAG - 21
Stem-loop(if miRNA)	--                   -    A         CU   AUAUUCAA   UCUGGAUCGAAGGGGGUUG AGGG GAUUAAAUC  UUU        U   ||||||||||||||||||| |||| |||||||||  |||   AGACCUAGCUUCCCCCAAC UUCC CUAAUUUAG  AAA        U AU                   C    -         AU   AAUCAAUU
Stem-loop sequence	UCUGGAUCGAAGGGGGUUGAGGGAGAUUAAAUCCUUUUAUAUUCAAUUUUAACUAAAAAUAGAUUUAAUCCCUUCCAACCCCCUUCGAUCCAGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU946897.1	ncRNA:21   GAGUUGGGGGAAGCUAGGUCU   1   =||||=||=|||||||||||| targets:302   UUCAAUCCUCUUCGAUCCAGA   322 Target Full Sequence	2.5	Zea mays clone 324711 mRNA sequence	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:21   GAG-UUGGGGGAAGCUAGGUCU   1   |||-||=||||||||||||||| targets:95   CUCCAAUCCCCUUCGAUCCAGA   116 Target Full Sequence	3.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   GAG-UUGGGGGAAGCUAGGUCU   1   |||-||=||||||||||||||| targets:95   CUCCAAUCCCCUUCGAUCCAGA   116 Target Full Sequence	3.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   GAG-UUGGGGGAAGCUAGGUCU   1   |||-||=||||||||||||||| targets:95   CUCCAAUCCCCUUCGAUCCAGA   116 Target Full Sequence	3.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   GAG-UUGGGGGAAGCUAGGUCU   1   |||-||=||||||||||||||| targets:95   CUCCAAUCCCCUUCGAUCCAGA   116 Target Full Sequence	3.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   GAG-UUGGGGGAAGCUAGGUCU   1   |||-||=||||||||||||||| targets:95   CUCCAAUCCCCUUCGAUCCAGA   116 Target Full Sequence	3.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   GAG-UUGGGGGAAGCUAGGUCU   1   |||-||=||||||||||||||| targets:95   CUCCAAUCCCCUUCGAUCCAGA   116 Target Full Sequence	3.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
HI402991.1	ncRNA:21   GAGUUGGGGGAAGCUAGGUCU   1   |||||=|||||||*||||||| targets:89   CUCAAUCCCCUUCAAUCCAGA   109 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB163452.1	ncRNA:21   GAGUUGGGGGAAGCUAGGUCU   1   |||||=|||||||*||||||| targets:89   CUCAAUCCCCUUCAAUCCAGA   109 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:21   GAGUUGGGGGAAGCUAGGUCU   1   |||||=|||||||*||||||| targets:89   CUCAAUCCCCUUCAAUCCAGA   109 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008657118.2	ncRNA:21   GAGUUGGGGGAAGCUAGGUCU   1   |||*||=|||||||||||||= targets:150   CUCCACUCCCUUCGAUCCAGG   170 Target Full Sequence	3.0	PREDICTED: Zea mays Phosphoenolpyruvate carboxylase 3 (LOC100384708), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT085111.1	ncRNA:21   GAGUUGGGGGAAGCUAGGUCU   1   =*|||=||||||||||||||= targets:1410   UCCAAUCCCCUUCGAUCCAGG   1430 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget