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BaseInfo

ncRNA ID	novel_zma_miR1290
Species	Zea mays
Class	miRNA
Genome position	Chr2:149873269-149873481 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - UCUACAUAUAAUAUCAUGACAUGU - 24
Stem-loop(if miRNA)	--            C          G            A    AAA       U      UA                      A     --AUG     U      C   AUGUCAUGAUAU AUAUGUAGAG UUGUGAUAAAAA UUGA   UGUUUUG GAAAGU  UCACGCACUAUGUGUAGAAACC AACUG     UACAU GAAGUU U   |||||||||||| |||||||||| |||||||||||| ||||   ||||||| ||||||  |||||||||||||||||||||| |||||     ||||| ||||||   UACAGUACUAUA UAUACAUCUC AAUACUAUUUUU AACU   AUAAAGU CUUUCA  AGUGCGUGAUACACAUCUUUGG UUGAC     GUGUA CUUUAG A UG            A          G            A    CUG       U      UG                      A     AGGAA     -      U
Stem-loop sequence	AUGUCAUGAUAUCAUAUGUAGAGGUUGUGAUAAAAAAUUGAAAAUGUUUUGUGAAAGUUAUCACGCACUAUGUGUAGAAACCAAACUGAUGUACAUUGAAGUUCUAUGAUUUCAUGUGAAGGACAGUUAGGUUUCUACACAUAGUGCGUGAGUACUUUCUUGAAAUAGUCUCAAAUUUUUAUCAUAAGCUCUACAUAUAAUAUCAUGACAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551149.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   |*||||||||=|||*||||||||| targets:280   AAAUGUCAUGGUAUCAUAUGUAGA   303 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109945307 (LOC109945307), mRNA	NA	coding protein	psRNATarget
EZ077238.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   ==||*|=||||||||||=|||||| targets:11   GUAUAUUAUGAUAUUAUGUGUAGA   34 Target Full Sequence	2.5	TSA: Zea mays contig12875, mRNA sequence	NA	coding protein	psRNATarget
BT067395.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   ||||**=||*|||||||||||||| targets:2070   ACAUAAUAUUAUAUUAUAUGUAGA   2093 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0035G13 mRNA, complete cds	NA	coding protein	psRNATarget
BT063516.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   ||||**=||*|||||||||||||| targets:2017   ACAUAAUAUUAUAUUAUAUGUAGA   2040 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0071M22 mRNA, complete cds	NA	coding protein	psRNATarget
EU973055.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   ||||**=||*|||||||||||||| targets:469   ACAUAAUAUUAUAUUAUAUGUAGA   492 Target Full Sequence	3.0	Zea mays clone 392618 mRNA sequence	NA	coding protein	psRNATarget