| ncRNA ID | osa-miR395a |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr4:31805494-31805635 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - GUGAAGUGCUUGGGGGAACUC - 31 |
| Stem-loop(if miRNA) |
U C U UC -- G AU --A U C UG CU A UGUC ACUGGAGUUCUCC CAA CACUUCA GUA AUAGCU GGCU GGCCUCAU G AU CA GUU C |||| ||||||||||||| ||| ||||||| ||| |||||| |||| |||||||| | || || ||| ACAG UGACCUCAAGGGG GUU GUGAAGU UAU UAUCGA UCGA CCGGGGUA C UA GU CAA A C U - -C GA G -- AAA - - GU -- U |
| Stem-loop sequence | UUGUCCACUGGAGUUCUCCUCAAUCCACUUCAGUAGAUAGCUAUGGCUAGGCCUCAUUGCAUUGCACUGUUACAUAACUGUGAUCAUGGGGCCAAAAGCUAGCUAUGUAUAGUGAAGUGCUUGGGGGAACUCCAGUUGACAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK099593.1 |
|
2.0 | Oryza sativa Japonica Group cDNA clone:J013043O08, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015776060.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group ATP-sulfurylase 3, chloroplastic (LOC4334073), mRNA | ATP-sulfurylase 3, chloroplastic(LOC4334073) | coding protein | psRNATarget | |||||||||
| AK111395.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:002-182-D04, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015775300.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331934), mRNA | low affinity sulfate transporter 3(LOC4331934) | coding protein | psRNATarget | |||||||||
| AK109845.1 |
|
3.0 | Oryza sativa Japonica Group cDNA clone:002-148-E09, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015788180.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group BEACH domain-containing protein B (LOC4341846), transcript variant X7, mRNA | BEACH domain-containing protein B(LOC4341846) | coding protein | psRNATarget | |||||||||
| XM_015788179.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group BEACH domain-containing protein B (LOC4341846), transcript variant X4, mRNA | BEACH domain-containing protein B(LOC4341846) | coding protein | psRNATarget | |||||||||
| XM_015788178.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group BEACH domain-containing protein B (LOC4341846), transcript variant X3, mRNA | BEACH domain-containing protein B(LOC4341846) | coding protein | psRNATarget |
| 1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
| 2 | PMID:16117853
"Molecular evolution of the rice miR395 gene family"; Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L; Cell Res. 15:631-638(2005). |
| 3 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |