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BaseInfo

ncRNA ID	novel_zma_miR1289
Species	Zea mays
Class	miRNA
Genome position	Chr8:170037595-170037646 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	29 - AAAUUUAGAGGAUGCUGCUGGAUU - 52
Stem-loop(if miRNA)	--                   --C  U   UCCAGCAGCGUCCUCUAAA   GG C   |||||||||||||||||||   ||   AGGUCGUCGUAGGAGAUUU   UC C UU                   AAA  U
Stem-loop sequence	UCCAGCAGCGUCCUCUAAACGGUCCUCUAAAUUUAGAGGAUGCUGCUGGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ099679.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   ||||||||||==|||||||||||| targets:102   AAUCCAGCAGUGUCCUCUAAAUUU   125 Target Full Sequence	2.5	TSA: Zea mays contig35334, mRNA sequence	NA	coding protein	psRNATarget
BT085234.2	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   |||||||=|||=|||||||||||| targets:5   AAUCCAGUAGCGUCCUCUAAAUUU   28 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0338D09 mRNA, complete cds	NA	coding protein	psRNATarget
JB166311.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   =||=|||||||=|||||||||||| targets:8   GAUUCAGCAGCGUCCUCUAAAUUU   31 Target Full Sequence	1.5	Sequence 3975 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237980.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   =||=|||||||=|||||||||||| targets:8   GAUUCAGCAGCGUCCUCUAAAUUU   31 Target Full Sequence	1.5	Sequence 3975 from Patent EP2985353	NA	coding protein	psRNATarget
HI405850.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   =||=|||||||=|||||||||||| targets:8   GAUUCAGCAGCGUCCUCUAAAUUU   31 Target Full Sequence	1.5	Sequence 3975 from Patent EP2074227	NA	coding protein	psRNATarget
EZ107270.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   **|||||||||=|||||||||||* targets:110   UCUCCAGCAGCGUCCUCUAAAUUC   133 Target Full Sequence	2.5	TSA: Zea mays contig42928, mRNA sequence	NA	coding protein	psRNATarget
BT088287.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   **|||||||||=|||||||||||* targets:587   UCUCCAGCAGCGUCCUCUAAAUUC   610 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0119E23 mRNA, complete cds	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   **|||||||||=|||||||||||* targets:654   UCUCCAGCAGCGUCCUCUAAAUUC   677 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649073.2	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   **|||||||||=|||||||||||* targets:1785   UCUCCAGCAGCGUCCUCUAAAUUC   1808 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649072.2	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   **|||||||||=|||||||||||* targets:1884   UCUCCAGCAGCGUCCUCUAAAUUC   1907 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945404.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   **|||||=|*|||||||||||||| targets:913   UCUCCAGUAACAUCCUCUAAAUUU   936 Target Full Sequence	2.0	Zea mays clone 265322 mRNA sequence	NA	coding protein	psRNATarget
EU943313.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   *=|=|*|||||=|||||||||||| targets:573   UGUUCUGCAGCGUCCUCUAAAUUU   596 Target Full Sequence	2.5	Zea mays clone 1596440 mRNA sequence	NA	coding protein	psRNATarget
XM_008683257.2	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   **|=|||||*|=|||||||||||| targets:4148   UUUUCAGCAACGUCCUCUAAAUUU   4171 Target Full Sequence	2.5	PREDICTED: Zea mays Tubulin-folding cofactor D (LOC100273796), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU951982.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   **|||||||*|||||*|||||||| targets:442   UCUCCAGCAACAUCCCCUAAAUUU   465 Target Full Sequence	2.5	Zea mays clone 1064285 60S ribosomal protein L37 mRNA, complete cds	NA	coding protein	psRNATarget
EU943703.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   **|=|||||*|*|||||||||||| targets:77   UCUUCAGCAACUUCCUCUAAAUUU   100 Target Full Sequence	2.5	Zea mays clone 1679827 mRNA sequence	NA	coding protein	psRNATarget
BT038480.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   *|||=|**|||||||||||||||* targets:1223   CAUCUAAGAGCAUCCUCUAAAUUA   1246 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0279I07 mRNA, complete cds	NA	coding protein	psRNATarget
BT069703.1	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   *|||=|**|||||||||||||||* targets:1313   CAUCUAAGAGCAUCCUCUAAAUUA   1336 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0221B22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669370.2	ncRNA:24   UUAGGUCGUCGUAGGAGAUUUAAA   1   *|||=|**|||||||||||||||* targets:1346   CAUCUAAGAGCAUCCUCUAAAUUA   1369 Target Full Sequence	3.0	PREDICTED: Zea mays Alpha carbonic anhydrase 1 chloroplastic (LOC100274185), transcript variant X1, mRNA	NA	coding protein	psRNATarget