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BaseInfo

ncRNA ID novel_zma_miR1284
Species Zea mays
Class miRNA
Genome position Chr8:144098792-144098840 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089706
Length 24
Mature sequence(if miRNA) 26 - ACCGGACUGUCCGGUGCACCAUCA - 49
Stem-loop(if miRNA) ---G  G         U       G
    GG GCACCGGAC GUCCGGU U
    || ||||||||| |||||||
    CC CGUGGCCUG CAGGCCA G
ACUA  A         U       C
Stem-loop sequence GGGGGCACCGGACUGUCCGGUGUGCACCGGACUGUCCGGUGCACCAUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ109126.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||||||*|||||||||||||||||
targets:173   UGAUGGCGCACCGGACAGUCCGGU   196

1.0 TSA: Zea mays contig44785, mRNA sequence NA coding protein psRNATarget
HI410113.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||||||||||||||||||||
targets:146   CGAGUGGUGCACCGGACAGUCCGGU   170

0.0 Sequence 8238 from Patent EP2074227 NA coding protein psRNATarget
LQ242243.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||||||||||||||||||||
targets:146   CGAGUGGUGCACCGGACAGUCCGGU   170

0.0 Sequence 8238 from Patent EP2985353 NA coding protein psRNATarget
JB170574.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||||||||||||||||||||
targets:146   CGAGUGGUGCACCGGACAGUCCGGU   170

0.0 Sequence 8238 from Patent EP2559767 NA coding protein psRNATarget
BT061709.2
ncRNA:24   ACUACC-ACGUGGCCUGUCAGGCCA   1
  *|||||-||||||||||||||||||
targets:586   CGAUGGGUGCACCGGACAGUCCGGU   610

2.0 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
BT061709.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|*|||||||||||||||||||||
targets:821   CGCUGGUGCACCGGACAGUCCGGU   844

0.0 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   ACUACC-ACGUGGCCUGUCAGGCCA   1
  *|||||-||||||||||||||||||
targets:586   CGAUGGGUGCACCGGACAGUCCGGU   610

2.0 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|*|||||||||||||||||||||
targets:821   CGCUGGUGCACCGGACAGUCCGGU   844

0.0 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
EU943461.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||=|||||||||||||*|||||||
targets:1395   UGGUGGUGCACCGGACUGUCCGGU   1418

1.5 Zea mays clone 1624403 mRNA sequence NA coding protein psRNATarget
EU943461.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *||-||*|||||||||*|||||||
targets:1176   CGA-GGAGCACCGGACUGUCCGGU   1198

2.5 Zea mays clone 1624403 mRNA sequence NA coding protein psRNATarget
BT038885.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **||||||||||||||=|||||||
targets:932   AAAUGGUGCACCGGACGGUCCGGU   955

1.5 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
BT038885.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *||||***||||||||||||||||
targets:1027   CGAUGCGCCACCGGACAGUCCGGU   1050

3.0 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
BT038885.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **=*|**||=||||||||||||||
targets:859   ACGGGAGGCGCCGGACAGUCCGGU   882

3.0 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **||||||||||||||=|||||||
targets:1303   AAAUGGUGCACCGGACGGUCCGGU   1326

1.5 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *||||***||||||||||||||||
targets:1398   CGAUGCGCCACCGGACAGUCCGGU   1421

3.0 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **=*|**||=||||||||||||||
targets:1230   ACGGGAGGCGCCGGACAGUCCGGU   1253

3.0 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB169871.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||||||||||||||||||||
targets:91   CCCUGGUGCACCGGACAGUCCGGU   114

0.0 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
JB169871.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||**||||||||||||||||
targets:10   CACUGGCACACCGGACAGUCCGGU   33

2.0 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
LQ241540.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||||||||||||||||||||
targets:91   CCCUGGUGCACCGGACAGUCCGGU   114

0.0 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
LQ241540.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||**||||||||||||||||
targets:10   CACUGGCACACCGGACAGUCCGGU   33

2.0 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
HI409410.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||||||||||||||||||||
targets:91   CCCUGGUGCACCGGACAGUCCGGU   114

0.0 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
HI409410.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||**||||||||||||||||
targets:10   CACUGGCACACCGGACAGUCCGGU   33

2.0 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
BT069074.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||||||||||||||||||||
targets:761   CCCUGGUGCACCGGACAGUCCGGU   784

0.0 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT069074.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **||||*||||||||||||=||||
targets:414   GCAUGGCGCACCGGACAGUUCGGU   437

2.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT069074.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=||*|*||||||||||||||||
targets:680   CGGUGCUUCACCGGACAGUCCGGU   703

2.0 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||||||||||||||||=|||
targets:404   CGAGUGGUGCACCGGACAGUCUGGU   428

1.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||||||||||||||||||||
targets:828   GCCUGGUGCACCGGACAGUCCGGU   851

0.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   ACUACCAC---GUGGCCUGUCAGGCCA   1
  ****||||---||||||||||||||||
targets:644   GUCCGGUGAACCACCGGACAGUCCGGU   670

3.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
EZ071967.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:48   CGGUGGUGCACCGGACUGUCCGGU   71

1.5 TSA: Zea mays contig07604, mRNA sequence NA coding protein psRNATarget
EZ105730.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:60   CGGUGGUGCACCGGACUGUCCGGU   83

1.5 TSA: Zea mays contig41388, mRNA sequence NA coding protein psRNATarget
JB170455.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:109   CGGUGGUGCACCGGACUGUCCGGU   132

1.5 Sequence 8119 from Patent EP2559767 NA coding protein psRNATarget
LQ242124.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:109   CGGUGGUGCACCGGACUGUCCGGU   132

1.5 Sequence 8119 from Patent EP2985353 NA coding protein psRNATarget
HI409994.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:109   CGGUGGUGCACCGGACUGUCCGGU   132

1.5 Sequence 8119 from Patent EP2074227 NA coding protein psRNATarget
EZ109324.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:34   CGGUGGUGCACCGGACUGUCCGGU   57

1.5 TSA: Zea mays contig44983, mRNA sequence NA coding protein psRNATarget
BT037301.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:979   CGGUGGUGCACCGGACUGUCCGGU   1002

1.5 Zea mays full-length cDNA clone ZM_BFb0161O03 mRNA, complete cds NA coding protein psRNATarget
BT036301.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **|*||*|||||||||*|||||||
targets:905   GAAGGGGGCACCGGACUGUCCGGU   928

2.5 Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds NA coding protein psRNATarget
NM_001309905.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:1151   CGGUGGUGCACCGGACUGUCCGGU   1174

1.5 Zea mays uncharacterized LOC100216760 (LOC100216760), mRNA NA coding protein psRNATarget
EU960150.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:1321   CGGUGGUGCACCGGACUGUCCGGU   1344

1.5 Zea mays clone 222169 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001175099.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:1410   CGGUGGUGCACCGGACUGUCCGGU   1433

1.5 Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA NA coding protein psRNATarget
BT064005.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:1410   CGGUGGUGCACCGGACUGUCCGGU   1433

1.5 Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds NA coding protein psRNATarget
EU962912.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:421   CGGUGGUGCACCGGACUGUCCGGU   444

1.5 Zea mays clone 246496 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001175661.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:1289   CGGUGGUGCACCGGACUGUCCGGU   1312

1.5 Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA NA coding protein psRNATarget
NM_001175661.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|||||*|||||||||*|||||||
targets:1173   GGAUGGGGCACCGGACUGUCCGGU   1196

2.5 Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA NA coding protein psRNATarget
BT065862.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:1289   CGGUGGUGCACCGGACUGUCCGGU   1312

1.5 Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds NA coding protein psRNATarget
BT065862.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|||||*|||||||||*|||||||
targets:1173   GGAUGGGGCACCGGACUGUCCGGU   1196

2.5 Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds NA coding protein psRNATarget
BT054171.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:1559   CGGUGGUGCACCGGACUGUCCGGU   1582

1.5 Zea mays full-length cDNA clone ZM_BFb0148C07 mRNA, complete cds NA coding protein psRNATarget
NM_001152406.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:1559   CGGUGGUGCACCGGACUGUCCGGU   1582

1.5 Zea mays uncharacterized LOC100279393 (LOC100279393), mRNA NA coding protein psRNATarget
EU943181.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||||||||||||*|||||||
targets:930   GGGUGGUGCACCGGACUGUCCGGU   953

1.5 Zea mays clone 1580698 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||*|||||||||||||||||
targets:178   GGGUGGAGCACCGGACAGUCCGGU   201

1.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
XM_008675750.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|||||||||=|||||||*|||||
targets:1230   CGAUGGUGCAUCGGACAGACCGGU   1253

2.5 PREDICTED: Zea mays uncharacterized LOC103650089 (LOC103650089), mRNA NA coding protein psRNATarget
EZ066204.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **||||*|||||||||||||||||
targets:89   GCAUGGCGCACCGGACAGUCCGGU   112

1.0 TSA: Zea mays contig01838, mRNA sequence NA coding protein psRNATarget
BT065201.2
ncRNA:24   AC--UA--CCACGUGGCCUGUCAGGCCA   1
  ||--=|--||||||||||||||||||||
targets:580   UGUCGUCGGGUGCACCGGACAGUCCGGU   607

0.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   ACUACCACG-UGGCCUGUCAGGCCA   1
  *|=|*||*|-|||||||||||||||
targets:812   CGGUUGUCCCACCGGACAGUCCGGU   836

3.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **||||*|||||||||||||||||
targets:473   GCAUGGCGCACCGGACAGUCCGGU   496

1.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||**||||||||||||||||
targets:797   CGGUGGCACACCGGACAGUCCGGU   820

2.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|*|||**||||||||||||||||
targets:695   CGCUGGCACACCGGACAGUCCGGU   718

2.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   AC--UA--CCACGUGGCCUGUCAGGCCA   1
  ||--=|--||||||||||||||||||||
targets:132   UGUCGUCGGGUGCACCGGACAGUCCGGU   159

0.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   ACUACCACG---UGGCCUGUCAGGCCA   1
  ****|||||---|||||||||||||||
targets:350   GUCCGGUGCCUCACCGGACAGUCCGGU   376

3.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
JB170393.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||=|||**||||||||||||||||
targets:29   UGGUGGCCCACCGGACAGUCCGGU   52

2.0 Sequence 8057 from Patent EP2559767 NA coding protein psRNATarget
HI409932.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||=|||**||||||||||||||||
targets:29   UGGUGGCCCACCGGACAGUCCGGU   52

2.0 Sequence 8057 from Patent EP2074227 NA coding protein psRNATarget
LQ242062.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||=|||**||||||||||||||||
targets:29   UGGUGGCCCACCGGACAGUCCGGU   52

2.0 Sequence 8057 from Patent EP2985353 NA coding protein psRNATarget
EZ108756.1
ncRNA:24   ACUACCA-CGUGGCCUGUCAGGCCA   1
  *|||||*-|||||||||||||||||
targets:143   CGAUGGGCGCACCGGACAGUCCGGU   167

3.0 TSA: Zea mays contig44415, mRNA sequence NA coding protein psRNATarget
EZ103080.1
ncRNA:24   ACUACCACGUGGCCUGU-CAGGCCA   1
  ***||||||||||||||-|||||||
targets:61   CUCUGGUGCACCGGACAUGUCCGGU   85

3.0 TSA: Zea mays contig38737, mRNA sequence NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||*|||||||||||||||||
targets:488   CGAGUGGCGCACCGGACAGUCCGGU   512

1.0 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||*|||||||||||||||||
targets:778   GCCUGGCGCACCGGACAGUCCGGU   801

1.0 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||*|||**||=|||||||||||||
targets:620   UGUUGGCUCAUCGGACAGUCCGGU   643

3.0 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
BT066013.2
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||*|||||||||||||||||
targets:488   CGAGUGGCGCACCGGACAGUCCGGU   512

1.0 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
BT066013.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||*|||||||||||||||||
targets:778   GCCUGGCGCACCGGACAGUCCGGU   801

1.0 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
BT066013.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||*|||**||=|||||||||||||
targets:620   UGUUGGCUCAUCGGACAGUCCGGU   643

3.0 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
EU940974.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||*|||||||||||||||||
targets:2537   CGACUGGCGCACCGGACAGUCCGGU   2561

1.0 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EZ106959.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||**||||||||||||||||
targets:94   CGGUGGCACACCGGACAGUCCGGU   117

2.0 TSA: Zea mays contig42617, mRNA sequence NA coding protein psRNATarget
BT066811.2
ncRNA:24   ACUA--CCACGUGGCCUGUCAGGCCA   1
  *|||--||*|||||||||||||||||
targets:577   AGAUCUGGCGCACCGGACAGUCCGGU   602

1.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   AC--UA--CCACGUGGCCUGUCAGGCCA   1
  ||--||--||*|||||||||||||||||
targets:479   UGUCAUCGGGCGCACCGGACAGUCCGGU   506

1.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   ACUA--CCACGUGGCCUGUCAGGCCA   1
  *|||--||*|||||||||||||||||
targets:577   AGAUCUGGCGCACCGGACAGUCCGGU   602

1.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AC--UA--CCACGUGGCCUGUCAGGCCA   1
  ||--||--||*|||||||||||||||||
targets:479   UGUCAUCGGGCGCACCGGACAGUCCGGU   506

1.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
EZ065990.1
ncRNA:21   ACCACGUGGCCUGUCAGGCCA   1
  |||*|||||||||||||||||
targets:1   UGGCGCACCGGACAGUCCGGU   21

1.0 TSA: Zea mays contig01624, mRNA sequence NA coding protein psRNATarget
EU959991.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|||||*|||||||||*|||||||
targets:696   CGAUGGCGCACCGGACUGUCCGGU   719

2.5 Zea mays clone 221041 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008663618.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|||||*|||||||||*|||||||
targets:782   CGAUGGCGCACCGGACUGUCCGGU   805

2.5 PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA NA coding protein psRNATarget
LQ241219.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||*||||=||||||||||||
targets:64   CGAGUGGCGCACUGGACAGUCCGGU   88

2.5 Sequence 7214 from Patent EP2985353 NA coding protein psRNATarget
JB169550.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||*||||=||||||||||||
targets:64   CGAGUGGCGCACUGGACAGUCCGGU   88

2.5 Sequence 7214 from Patent EP2559767 NA coding protein psRNATarget
HI409089.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||*||||=||||||||||||
targets:64   CGAGUGGCGCACUGGACAGUCCGGU   88

2.5 Sequence 7214 from Patent EP2074227 NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|*|||*|||||||||||||||||
targets:599   CGUUGGCGCACCGGACAGUCCGGU   622

1.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||*|||||||||||||||||
targets:503   GCCUGGCGCACCGGACAGUCCGGU   526

1.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT065921.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|*|||*|||||||||||||||||
targets:599   CGUUGGCGCACCGGACAGUCCGGU   622

1.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||*|||||||||||||||||
targets:503   GCCUGGCGCACCGGACAGUCCGGU   526

1.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||*|||||||||||||||||
targets:374   GUCUGGCGCACCGGACAGUCCGGU   397

1.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068871.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||||||||*|||||||||||
targets:495   GCCUGGUGCACCUGACAGUCCGGU   518

1.5 Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds NA coding protein psRNATarget
BT068871.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||*|||**||||||||||||||||
targets:687   UGUUGGCUCACCGGACAGUCCGGU   710

2.0 Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds NA coding protein psRNATarget
NM_001176621.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ***|||||||||*|||||||||||
targets:495   GCCUGGUGCACCUGACAGUCCGGU   518

1.5 Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA NA coding protein psRNATarget
NM_001176621.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||*|||**||||||||||||||||
targets:687   UGUUGGCUCACCGGACAGUCCGGU   710

2.0 Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA NA coding protein psRNATarget
EU940845.1
ncRNA:24   ACUACCACG---UGGCCUGUCAGGCCA   1
  ***||||||---|||||||||||||||
targets:1466   GUCUGGUGCCUCACCGGACAGUCCGGU   1492

3.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   AC--UA--CCACGUGGCCUGUCAGGCCA   1
  ||--||--||*|||||||||||||||||
targets:4373   UGUCAUCGGGCGCACCGGACAGUCCGGU   4400

1.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
EU970212.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||*|||||||||*|||||||
targets:738   CGGUGGCGCACCGGACUGUCCGGU   761

2.5 Zea mays clone 342257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU970212.1
ncRNA:24   ACUA--CCACGUGGCCUGUCAGGCCA   1
  ||=|--||*|||||||||*|||||||
targets:397   UGGUCUGGCGCACCGGACUGUCCGGU   422

2.5 Zea mays clone 342257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT069634.1
ncRNA:24   ACUA---CCACGUGGCCUGUCAGGCCA   1
  ||=|---||*|||||||||*|||||||
targets:466   UGGUCUGGGGGCACCGGACUGUCCGGU   492

2.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
NM_001176828.1
ncRNA:24   ACUA---CCACGUGGCCUGUCAGGCCA   1
  ||=|---||*|||||||||*|||||||
targets:466   UGGUCUGGGGGCACCGGACUGUCCGGU   492

2.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
BT066461.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||*|||||*|||||||||||
targets:483   GGGUGGCGCACCAGACAGUCCGGU   506

2.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
BT060603.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||*|||||||||*|||||||
targets:1544   CGGUGGCGCACCGGACUGUCCGGU   1567

2.5 Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds NA coding protein psRNATarget
LQ241481.1
ncRNA:24   ACUACCAC--GUGGCCUGUCAGGCCA   1
  ****||||--||||||||||||||||
targets:27   GUCCGGUGUACACCGGACAGUCCGGU   52

2.5 Sequence 7476 from Patent EP2985353 NA coding protein psRNATarget
JB169812.1
ncRNA:24   ACUACCAC--GUGGCCUGUCAGGCCA   1
  ****||||--||||||||||||||||
targets:27   GUCCGGUGUACACCGGACAGUCCGGU   52

2.5 Sequence 7476 from Patent EP2559767 NA coding protein psRNATarget
HI409351.1
ncRNA:24   ACUACCAC--GUGGCCUGUCAGGCCA   1
  ****||||--||||||||||||||||
targets:27   GUCCGGUGUACACCGGACAGUCCGGU   52

2.5 Sequence 7476 from Patent EP2074227 NA coding protein psRNATarget
XM_020548733.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||*|||||||||*|||||||
targets:2191   CGGUGGCGCACCGGACUGUCCGGU   2214

2.5 PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109944105), mRNA NA coding protein psRNATarget
BT054293.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  *|=|||*|||||||||*|||||||
targets:2197   CGGUGGCGCACCGGACUGUCCGGU   2220

2.5 Zea mays full-length cDNA clone ZM_BFb0218B09 mRNA, complete cds NA coding protein psRNATarget
BT019242.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  ||--||||||||||||*|||||||
targets:635   UG--GGUGCACCGGACUGUCCGGU   656

1.5 Zea mays clone Contig915.F mRNA sequence NA coding protein psRNATarget
EU952168.1
ncRNA:24   ACUA--CCACGUGGCCUGUCAGGCCA   1
  ||=|--||*|||||||||*|||||||
targets:299   UGGUCUGGCGCACCGGACUGUCCGGU   324

2.5 Zea mays clone 1215356 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ091678.1
ncRNA:24   ACUA--CCACGUGGCCUGUCAGGCCA   1
  ||=|--||*|||||||||*|||||||
targets:8   UGGUCUGGCGCACCGGACUGUCCGGU   33

2.5 TSA: Zea mays contig27327, mRNA sequence NA coding protein psRNATarget
EZ088459.1
ncRNA:24   ACUA--CCACGUGGCCUGUCAGGCCA   1
  ||=|--||*|||||||||*|||||||
targets:80   UGGUCUGGCGCACCGGACUGUCCGGU   105

2.5 TSA: Zea mays contig24105, mRNA sequence NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   AC--UA--CCACGUGGCCUGUCAGGCCA   1
  ||--=|--||*|||||||||||||||||
targets:491   UGUCGUCGGGCGCACCGGACAGUCCGGU   518

1.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **=**|**||||||||||||||||
targets:838   CCGGUGCACACCGGACAGUCCGGU   861

3.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:24   AC--UA--CCACGUGGCCUGUCAGGCCA   1
  ||--=|--||*|||||||||||||||||
targets:491   UGUCGUCGGGCGCACCGGACAGUCCGGU   518

1.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   ACUACCACGUGGCCUGUCAGGCCA   1
  **=**|**||||||||||||||||
targets:838   CCGGUGCACACCGGACAGUCCGGU   861

3.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   ACUA----CCACGUGGCCUGUCAGGCCA   1
  |||*----||*|||||||||||||||||
targets:326   UGAGCACGGGCGCACCGGACAGUCCGGU   353

1.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   ACUA----CCACGUGGCCUGUCAGGCCA   1
  |||*----||*|||||||||||||||||
targets:326   UGAGCACGGGCGCACCGGACAGUCCGGU   353

1.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
U41079.1
ncRNA:24   ACUACCAC---GUGGCCUGUCAGGCCA   1
  ****||||---||||||||||||||||
targets:21   GUCCGGUGACUCACCGGACAGUCCGGU   47

3.0 Zea mays copia-type retroelement PREM-2, partial sequence NA coding protein psRNATarget
LQ242135.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||*|||||*|||||||||||
targets:2   CGAGUGGCGCACCAGACAGUCCGGU   26

2.5 Sequence 8130 from Patent EP2985353 NA coding protein psRNATarget
HI410005.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||*|||||*|||||||||||
targets:2   CGAGUGGCGCACCAGACAGUCCGGU   26

2.5 Sequence 8130 from Patent EP2074227 NA coding protein psRNATarget
JB170466.1
ncRNA:24   ACU-ACCACGUGGCCUGUCAGGCCA   1
  *||-|||*|||||*|||||||||||
targets:2   CGAGUGGCGCACCAGACAGUCCGGU   26

2.5 Sequence 8130 from Patent EP2559767 NA coding protein psRNATarget
EU948808.1
ncRNA:24   ACUA--CCACGUGGCCUGUCAGGCCA   1
  ||=|--||*|||||||||*|||||||
targets:292   UGGUCUGGCGCACCGGACUGUCCGGU   317

2.5 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
NM_001176839.1
ncRNA:24   ACUA--CCACGUGGCCUGUCAGGCCA   1
  ||=|--||*|||||||||*|||||||
targets:1268   UGGUCUGGCGCACCGGACUGUCCGGU   1293

2.5 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
BT069667.1
ncRNA:24   ACUA--CCACGUGGCCUGUCAGGCCA   1
  ||=|--||*|||||||||*|||||||
targets:1268   UGGUCUGGCGCACCGGACUGUCCGGU   1293

2.5 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
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