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BaseInfo

ncRNA ID	novel_zma_miR1279
Species	Zea mays
Class	miRNA
Genome position	Chr7:108917176-108917357 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR5451004
Length	24
Mature sequence(if miRNA)	1 - AGGUAGUGUUUGGUUAGUAGGGAC - 24
Stem-loop(if miRNA)	--   UA          AG                         U                CUA        A              UAAC   AGG  GUGUUUGGUU  UAGGGACUAAUUUUUAGUCCCUCCA UUUAUUCCACUUUAGU   UAAAUUGU AAAUAUGGAAACUA    U   |||  ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||   |||||||| ||||||||||||||    C   UCC  CACAAACCAA  AUCUCUGAUUAAAAAUCAGGGAGGU AAAUAAGGUGAAAUCA   AUUUAACA UUUAUACCUUUGAU    U AA   CC          -A                         U                AUG        G              UUUA
Stem-loop sequence	AGGUAGUGUUUGGUUAGUAGGGACUAAUUUUUAGUCCCUCCAUUUUAUUCCACUUUAGUCUAUAAAUUGUAAAAUAUGGAAACUAUAACUCUAUUUUAGUUUCCAUAUUUGACAAUUUAGUAACUAAAGUGGAAUAAAUUGGAGGGACUAAAAAUUAGUCUCUAAAACCAAACACCCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406614.1	ncRNA:24   CAGGGAUGAUUGGUUUGUGAUGGA   1   |||||||*|||||||||||||||| targets:100   GUCCCUAGUAACCAAACACUACCU   123 Target Full Sequence	1.0	Sequence 4739 from Patent EP2074227	NA	coding protein	psRNATarget
JB167075.1	ncRNA:24   CAGGGAUGAUUGGUUUGUGAUGGA   1   |||||||*|||||||||||||||| targets:100   GUCCCUAGUAACCAAACACUACCU   123 Target Full Sequence	1.0	Sequence 4739 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238744.1	ncRNA:24   CAGGGAUGAUUGGUUUGUGAUGGA   1   |||||||*|||||||||||||||| targets:100   GUCCCUAGUAACCAAACACUACCU   123 Target Full Sequence	1.0	Sequence 4739 from Patent EP2985353	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   CAGGGAUGAUUGGUUUGUGAUGGA   1   |||||||*|||||||||||||||| targets:268   GUCCCUAGUAACCAAACACUACCU   291 Target Full Sequence	1.0	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
XM_020549268.1	ncRNA:24   CAGGGAUGAUUGGUUUGUGAUGGA   1   |||||||*|||||||||||||||| targets:1267   GUCCCUAGUAACCAAACACUACCU   1290 Target Full Sequence	1.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   CAGGGAUGAUUGGUUUGUGAUGGA   1   |||||||*|||||||||||||||| targets:145   GUCCCUAGUAACCAAACACUACCU   168 Target Full Sequence	1.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552869.1	ncRNA:24   CAGGGAUGAUUGGUUUGUGAUGGA   1   |||||||*|||||||||||||||| targets:1784   GUCCCUAGUAACCAAACACUACCU   1807 Target Full Sequence	1.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget