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BaseInfo

ncRNA ID	novel_zma_miR1278
Species	Zea mays
Class	miRNA
Genome position	Chr7:95578561-95578677 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089698
Length	24
Mature sequence(if miRNA)	94 - AAAUGAAAUAAAGUGGAGGGACUA - 117
Stem-loop(if miRNA)	--                C         CC  -     AC      UA          C   GUCCCUCCAUUUUAUU UAUUUUAGU  CA AAAUU  UAAAUA  GAAACUAAAA U   |||||||||||||||| |||||||||  || |||||  ||||||  |||||||||| C   CAGGGAGGUGAAAUAA GUAAAAUCA  GU UUUAA  AUUUAU  CUUUGAUUUU U AU                A         -A  A     CU      CC          A
Stem-loop sequence	GUCCCUCCAUUUUAUUCUAUUUUAGUCCCAAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCCUAUUUAUCAAUUUAUGAACUAAAAUGAAAUAAAGUGGAGGGACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU967664.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   |||||=||||||||||||*||||| targets:1125   UAGUCUCUCCACUUUAUUCCAUUU   1148 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   |||||=||||||||||||*||||| targets:1125   UAGUCUCUCCACUUUAUUCCAUUU   1148 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*||=|||||||||||| targets:30   UAGUCCCUACAUUUUAUUUCAUUU   53 Target Full Sequence	2.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*||=|||||||||||| targets:30   UAGUCCCUACAUUUUAUUUCAUUU   53 Target Full Sequence	2.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*||=|||||||||||| targets:30   UAGUCCCUACAUUUUAUUUCAUUU   53 Target Full Sequence	2.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008683103.2	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||-||||||||=|||||||||||| targets:2886   UA-UCCCUCCAUUUUAUUUCAUUU   2908 Target Full Sequence	1.5	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||-||||||||=|||||||||||| targets:887   UA-UCCCUCCAUUUUAUUUCAUUU   909 Target Full Sequence	1.5	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||-||||||||=|||||||||||| targets:887   UA-UCCCUCCAUUUUAUUUCAUUU   909 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*|||||||||*||||| targets:28   UAGUCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*|||||||||*||||| targets:28   UAGUCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   AUCAGGGAGGUGAAAUAAAGUAAA   1   ||||||||*|||||||||*||||| targets:28   UAGUCCCUACACUUUAUUCCAUUU   51 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget