Search result

BaseInfo

ncRNA ID	novel_zma_miR1263
Species	Zea mays
Class	miRNA
Genome position	Chr7:22488445-22488504 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089705;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	37 - GGAUUGAAGGGGAUUGAGGGGGAA - 60
Stem-loop(if miRNA)	--      A                   AA   GGAUUG AGGGGAUUGAGGGGGAAAU  A   |||||| |||||||||||||||||||   CCUAAC UCCUCUAACUCUCCCUUUA  C UU      G                   AU
Stem-loop sequence	GGAUUGAAGGGGAUUGAGGGGGAAAUAAACUAAUUUCCCUCUCAAUCUCCUGCAAUCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170124.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||=||||||||||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	1.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||=||||||||||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	1.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||=||||||||||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	1.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||=||||||||||||||| targets:820   UUCCCCCUUAAUCCCCUUCAAUCC   843 Target Full Sequence	1.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||=||||||||||||||| targets:859   UUCCCCCUUAAUCCCCUUCAAUCC   882 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||=||||||||||||||| targets:864   UUCCCCCUUAAUCCCCUUCAAUCC   887 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||=||||||||||||||| targets:864   UUCCCCCUUAAUCCCCUUCAAUCC   887 Target Full Sequence	1.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *||=|||||||||||||||||||| targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106 Target Full Sequence	0.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *||=|||||||||||||||||||| targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106 Target Full Sequence	0.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *||=|||||||||||||||||||| targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106 Target Full Sequence	0.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001317055.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   |||=||||||=||||||||||||* targets:1497   UUCUCCCUCAGUCCCCUUCAAUCA   1520 Target Full Sequence	2.0	Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA	NA	coding protein	psRNATarget
BT042257.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   |||=||||||=||||||||||||* targets:1497   UUCUCCCUCAGUCCCCUUCAAUCA   1520 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235405.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||*||||||=|||||||| targets:68   UUCCCCCUGAAUCCCUUUCAAUCC   91 Target Full Sequence	2.5	Sequence 1400 from Patent EP2985353	NA	coding protein	psRNATarget
JB163736.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||*||||||=|||||||| targets:68   UUCCCCCUGAAUCCCUUUCAAUCC   91 Target Full Sequence	2.5	Sequence 1400 from Patent EP2559767	NA	coding protein	psRNATarget
HI403275.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||||||*||||||=|||||||| targets:68   UUCCCCCUGAAUCCCUUUCAAUCC   91 Target Full Sequence	2.5	Sequence 1400 from Patent EP2074227	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||*|||||||||=||||||||| targets:194   UUCCACCUCAAUCCUCUUCAAUCC   217 Target Full Sequence	1.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   AAGGGGGAG-UUAGGGGAAGUUAGG   1   ||=||=|||-||||||||||||||| targets:56   UUUCCUCUCCAAUCCCCUUCAAUCC   80 Target Full Sequence	3.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *||||||||||||||||*|||||| targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *||||||||||||||||*|||||| targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *||||||||||||||||*|||||| targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
BT038305.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||*=|||||||||=|||||||| targets:610   UUCCAUCUCAAUCCCUUUCAAUCC   633 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224P03 mRNA, complete cds	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   |||=|=|||||||||||*|||||| targets:1462   UUCUCUCUCAAUCCCCUCCAAUCC   1485 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541843.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||||*=|||||||||=|||||||| targets:1615   UUCCAUCUCAAUCCCUUUCAAUCC   1638 Target Full Sequence	2.5	PREDICTED: Zea mays putative actin family protein (LOC100191561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545649.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   |||*||||||*||||||||||||| targets:714   UUCACCCUCAUUCCCCUUCAAUCC   737 Target Full Sequence	1.0	PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109942989), transcript variant X5, mRNA	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *|=|=||||||||||||*|||||| targets:29   AUUCUCCUCAAUCCCCUCCAAUCC   52 Target Full Sequence	1.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *|=|=||||||||||||*|||||| targets:29   AUUCUCCUCAAUCCCCUCCAAUCC   52 Target Full Sequence	1.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *|=|=||||||||||||*|||||| targets:29   AUUCUCCUCAAUCCCCUCCAAUCC   52 Target Full Sequence	1.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   **||||||||||||||*||||||| targets:1962   AACCCCCUCAAUCCCCCUCAAUCC   1985 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   |||=|*|||||||||||*|||||| targets:69   UUCUCACUCAAUCCCCUCCAAUCC   92 Target Full Sequence	2.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   |||=|*|||||||||||*|||||| targets:69   UUCUCACUCAAUCCCCUCCAAUCC   92 Target Full Sequence	2.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   |||=|*|||||||||||*|||||| targets:69   UUCUCACUCAAUCCCCUCCAAUCC   92 Target Full Sequence	2.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   AAGG--GGG---AGUUAGGGGAAGUUAGG   1   ||||--=||---||||||||||||||||| targets:964   UUCCAAUCCGUAUCAAUCCCCUUCAAUCC   992 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||=|*||||||||||||*|||||| targets:74   UUUCACCUCAAUCCCCUCCAAUCC   97 Target Full Sequence	1.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ||=|*||||||||||||*|||||| targets:40   UUUCACCUCAAUCCCCUCCAAUCC   63 Target Full Sequence	1.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
BT063131.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   |||=|||*|||||||||*|||||| targets:2555   UUCUCCCGCAAUCCCCUACAAUCC   2578 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0029C06 mRNA, complete cds	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   **||||=|||||||||*||||||| targets:842   AACCCCUUCAAUCCCCCUCAAUCC   865 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   *|==||||=||||||||*|||||| targets:76   CUUUCCCUUAAUCCCCUCCAAUCC   99 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU972313.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   ***||||||=||||||*||||||| targets:23   AAACCCCUCGAUCCCCCUCAAUCC   46 Target Full Sequence	2.5	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   AAGGGGGAGUUAGGGGAAGUUAGG   1   **||*|||||||||||*||||||| targets:73   AACCACCUCAAUCCCCCUCAAUCC   96 Target Full Sequence	1.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget