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BaseInfo

ncRNA ID novel_zma_miR1261
Species Zea mays
Class miRNA
Genome position Chr7:43331063-43331122 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089698;SRR2089699;SRR2089703;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - GGAGAAUCUGGUUGUGGGGAGAAU - 24
Stem-loop(if miRNA) --   UU  --      C      GAAAAUC
  UUU  CU  GACCAG UUUUCU       U
  |||  ||  |||||| ||||||
  AGA  GG  UUGGUC AAGAGG       G
UA   GG  UG      U      GGUGUCG
Stem-loop sequence UUUUUCUGACCAGCUUUUCUGAAAAUCUGGCUGUGGGGAGAAUCUGGUUGUGGGGAGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU963449.1
ncRNA:24   UAAGAGGGGUGUUGGUCUAAGAGG   1
  ||||||||=|||||||||||||||
targets:708   AUUCUCCCUACAACCAGAUUCUCC   731

1.0 Zea mays clone 262668 mRNA sequence NA coding protein psRNATarget
BT054491.2
ncRNA:24   UAAGAGGGGUGUUGGUCUAAGAGG   1
  |||||||=||||=|||||||||||
targets:259   AUUCUCCUCACAGCCAGAUUCUCC   282

2.5 Zea mays full-length cDNA clone ZM_BFc0096D06 mRNA, complete cds NA coding protein psRNATarget
XM_020545993.1
ncRNA:24   UAAGAGGGGUGUUGGUCUAAGAGG   1
  ||||||||||||=||||||||||*
targets:193   AUUCUCCCCACAGCCAGAUUCUCA   216

2.5 PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008664880.2
ncRNA:24   UAAGAGGGGUGUUGGUCUAAGAGG   1
  ||||||||||||=||||||||||*
targets:443   AUUCUCCCCACAGCCAGAUUCUCA   466

2.5 PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008664881.2
ncRNA:24   UAAGAGGGGUGUUGGUCUAAGAGG   1
  ||||||||||||=||||||||||*
targets:447   AUUCUCCCCACAGCCAGAUUCUCA   470

2.5 PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X2, mRNA NA coding protein psRNATarget
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