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BaseInfo

ncRNA ID novel_zma_miR1259
Species Zea mays
Class miRNA
Genome position Chr7:44057826-44057906 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089713;SRR2287159;SRR2287161;SRR2287162;SRR1745812;SRR2089701;SRR2089704
Length 22
Mature sequence(if miRNA) 1 - UGAGCCGAGCCAAUAUCACUUC - 22
Stem-loop(if miRNA) --CA        A              CG  CA   CA AA
    UGGUAUUG CUUGGCUCAUCUCU  CC  CAC  G  U
    |||||||| ||||||||||||||  ||  |||  |
    ACUAUAAC GAGCCGAGUGGAGG  GG  GUG  C  C
CUUC        C              -A  CC   AA AC
Stem-loop sequence CAUGGUAUUGACUUGGCUCAUCUCUCGCCCACACCAGAAUCCACAAGUGCCGGAGGAGGUGAGCCGAGCCAAUAUCACUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008655719.2
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *==||||||||||=||||||||
targets:756   CGGGUGAUAUUGGUUCGGCUCA   777

1.5 PREDICTED: Zea mays nodulation-signaling pathway 2 protein (LOC103634103), mRNA NA coding protein psRNATarget
HI403244.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  ||*|||||||||||*|||||||
targets:6   GACGUGAUAUUGGCACGGCUCA   27

1.5 Sequence 1369 from Patent EP2074227 NA coding protein psRNATarget
JB163705.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  ||*|||||||||||*|||||||
targets:6   GACGUGAUAUUGGCACGGCUCA   27

1.5 Sequence 1369 from Patent EP2559767 NA coding protein psRNATarget
JB163410.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  ||*|||||||||||*|||||||
targets:6   GACGUGAUAUUGGCACGGCUCA   27

1.5 Sequence 1074 from Patent EP2559767 NA coding protein psRNATarget
LQ235079.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  ||*|||||||||||*|||||||
targets:6   GACGUGAUAUUGGCACGGCUCA   27

1.5 Sequence 1074 from Patent EP2985353 NA coding protein psRNATarget
LQ235374.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  ||*|||||||||||*|||||||
targets:6   GACGUGAUAUUGGCACGGCUCA   27

1.5 Sequence 1369 from Patent EP2985353 NA coding protein psRNATarget
HI402949.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  ||*|||||||||||*|||||||
targets:6   GACGUGAUAUUGGCACGGCUCA   27

1.5 Sequence 1074 from Patent EP2074227 NA coding protein psRNATarget
HI408560.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  ****||=|=|||||||||||||
targets:5   ACUAUGGUGUUGGCUCGGCUCA   26

3.0 Sequence 6685 from Patent EP2074227 NA coding protein psRNATarget
LQ240690.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  ****||=|=|||||||||||||
targets:5   ACUAUGGUGUUGGCUCGGCUCA   26

3.0 Sequence 6685 from Patent EP2985353 NA coding protein psRNATarget
JB169021.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  ****||=|=|||||||||||||
targets:5   ACUAUGGUGUUGGCUCGGCUCA   26

3.0 Sequence 6685 from Patent EP2559767 NA coding protein psRNATarget
KJ726875.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:433   CGAGAGAUAUUGGCGCGGCUCA   454

2.5 Zea mays clone pUT3416 GRAS transcription factor (GRAS31) mRNA, partial cds NA coding protein psRNATarget
KJ726955.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:766   CGAGCGAUAUUGGCGCGGCUCA   787

2.5 Zea mays clone pUT3652 GRAS transcription factor (GRAS10) mRNA, partial cds NA coding protein psRNATarget
BT069447.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:502   CGAGAGAUAUUGGCGCGGCUCA   523

2.5 Zea mays full-length cDNA clone ZM_BFb0134J07 mRNA, complete cds NA coding protein psRNATarget
KJ727939.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:1102   CGAGAGAUAUUGGCGCGGCUCA   1123

2.5 Zea mays clone pUT6034 GRAS transcription factor (GRAS80) mRNA, partial cds NA coding protein psRNATarget
BT063504.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:1195   CGAGAGAUAUUGGCGCGGCUCA   1216

2.5 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds NA coding protein psRNATarget
BT054213.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:1073   CGAGCGAUAUUGGCGCGGCUCA   1094

2.5 Zea mays full-length cDNA clone ZM_BFb0171M14 mRNA, complete cds NA coding protein psRNATarget
XM_020538634.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:1137   CGAGCGAUAUUGGCGCGGCUCA   1158

2.5 PREDICTED: Zea mays uncharacterized LOC100279420 (LOC100279420), mRNA NA coding protein psRNATarget
BT053927.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:915   CGAGAGAUAUUGGCGCGGCUCA   936

2.5 Zea mays full-length cDNA clone ZM_BFc0046K18 mRNA, complete cds NA coding protein psRNATarget
BT063450.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:1368   CGAGAGAUAUUGGCGCGGCUCA   1389

2.5 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds NA coding protein psRNATarget
NM_001174946.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:1368   CGAGAGAUAUUGGCGCGGCUCA   1389

2.5 Zea mays Scarecrow-like protein 6 (LOC100382187), mRNA NA coding protein psRNATarget
XM_020552649.1
ncRNA:22   CUUCACUAUAACCGAGCCGAGU   1
  *=||*|||||||||*|||||||
targets:1376   CGAGAGAUAUUGGCGCGGCUCA   1397

2.5 PREDICTED: Zea mays uncharacterized LOC100279263 (LOC100279263), mRNA NA coding protein psRNATarget
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