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BaseInfo

ncRNA ID	novel_zma_miR1249
Species	Zea mays
Class	miRNA
Genome position	Chr7:107162809-107162895 [-]
Reference genome	RefGen_v4
Source	SRR2089710
Length	20
Mature sequence(if miRNA)	68 - AGUGGUUUGGAGGGAUUGGA - 87
Stem-loop(if miRNA)	--    - U      -       --------------A   UGUUUAAAUU   AGUG G UUGGAG GGAUUGG               GAG          C   |||| | |||||| |||||||               |||          C   UCAC C AACCUC UCUAACU               CUA          U AC    U U      A       AUACAUAACUCCCCA   AACUAGAUAA
Stem-loop sequence	AGUGGUUUGGAGGGAUUGGAGAGUGUUUAAAUUCCUAAUAGAUCAAAUCACCCCUCAAUACAUAUCAAUCUACUCCAAUCUCACUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020540884.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   ||=||||||||||||||||| targets:3930   UCUAAUCCCUCCAAACCACU   3949 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940748), mRNA	NA	coding protein	psRNATarget
EU950079.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   |=|||||=|||||||||||| targets:1672   UUCAAUCUCUCCAAACCACU   1691 Target Full Sequence	2.5	Zea mays clone 460377 mRNA sequence	NA	coding protein	psRNATarget
EZ074421.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   ||||||||||*||||||||| targets:35   UCCAAUCCCUACAAACCACU   54 Target Full Sequence	1.5	TSA: Zea mays contig10058, mRNA sequence	NA	coding protein	psRNATarget
EU946584.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   |||||||||||||||*|||| targets:528   UCCAAUCCCUCCAAAACACU   547 Target Full Sequence	1.5	Zea mays clone 317794 mRNA sequence	NA	coding protein	psRNATarget
XM_008666548.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   |||*|||||||||||||||| targets:234   UCCCAUCCCUCCAAACCACU   253 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643386 (LOC103643386), mRNA	NA	coding protein	psRNATarget
BT039083.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   |||||||||||||||*|||| targets:1287   UCCAAUCCCUCCAAAACACU   1306 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0368P21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551172.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   |||||||||||||||*|||| targets:1326   UCCAAUCCCUCCAAAACACU   1345 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100281458 (pco141348), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001149774.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   |=|||||||||||||*|||| targets:844   UUCAAUCCCUCCAAAACACU   863 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275771 (LOC100275771), mRNA	NA	coding protein	psRNATarget
EU957995.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   |=|||||||||||||*|||| targets:844   UUCAAUCCCUCCAAAACACU   863 Target Full Sequence	2.5	Zea mays clone 1639663 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY104485.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   |=|||||||||||||*|||| targets:1190   UUCAAUCCCUCCAAAACACU   1209 Target Full Sequence	2.5	Zea mays PCO125163 mRNA sequence	NA	coding protein	psRNATarget
BT064784.1	ncRNA:20   AGGUUAGGGAGGUUUGGUGA   1   **||||||||||||*||||| targets:857   AGCAAUCCCUCCAAUCCACU   876 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132E20 mRNA, complete cds	NA	coding protein	psRNATarget