Search result

BaseInfo

ncRNA ID	novel_zma_miR1242
Species	Zea mays
Class	miRNA
Genome position	Chr7:155600899-155600960 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089714;SRR2089706
Length	25
Mature sequence(if miRNA)	38 - AGCUUGGGGUAGGGUAAUGAUGGCU - 62
Stem-loop(if miRNA)	--    UG     -    AAU   G  -  CUC   AGCU  GGGUA GGGU   GAU GC UC   C   ||||  ||||| ||||   ||| || ||   UUGG  CCCGU CCCG   CUG UG AG   U GG    GU     G    --G   G  U  UUG
Stem-loop sequence	AGCUUGGGGUAGGGUAAUGAUGGCUCCUCCUGUUGAUGUGGUCGGCCCGUGCCCUGGGUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU940899.1	ncRNA:25   UCGGUAGUAAUGGGAUGGGGUUCGA   1   ||||||||||||||||||||*|||| targets:1345   AGCCAUCAUUACCCUACCCCUAGCU   1369 Target Full Sequence	1.5	Zea mays clone 1168123 mRNA sequence	NA	coding protein	psRNATarget
XM_020541624.1	ncRNA:25   UCGGUAGUAAUGGGAUGGGGUUCGA   1   ||||||||||||||||||||*|||| targets:1339   AGCCAUCAUUACCCUACCCCUAGCU   1363 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644648 (LOC103644648), mRNA	NA	coding protein	psRNATarget
EU941303.1	ncRNA:25   UCGGUAGUAAUGGGAUGGGGUUCGA   1   =||||||||||=||||||||*|||| targets:254   GGCCAUCAUUAUCCUACCCCUAGCU   278 Target Full Sequence	2.5	Zea mays clone 1444511 mRNA sequence	NA	coding protein	psRNATarget
EU952200.1	ncRNA:25   UC---GGUAGUAAUGGGAUGGGGUUCGA   1   ||---|||||||*||||||||||=|||| targets:269   AGGCACCAUCAUCACCCUACCCCGAGCU   296 Target Full Sequence	2.5	Zea mays clone 1221105 mRNA sequence	NA	coding protein	psRNATarget
XM_020541001.1	ncRNA:25   UCGGUAGUAAUGGGAUGGGGUUCGA   1   =|||*|||||||||||||||*|||| targets:5514   GGCCUUCAUUACCCUACCCCUAGCU   5538 Target Full Sequence	1.5	PREDICTED: Zea mays plasma membrane ATPase 2-like (LOC103632998), transcript variant X36, mRNA	NA	coding protein	psRNATarget
XM_008654039.1	ncRNA:25   UCG-GUAGUAAUGGGAUGGGGUUCGA   1   =|=-|||||||||||||||||*|||| targets:666   GGUACAUCAUUACCCUACCCCUAGCU   691 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103632220 (LOC103632220), mRNA	NA	coding protein	psRNATarget
EU952221.1	ncRNA:25   UCG-GUAGUAAUGGGAUGGGGUUCGA   1   =|=-|||||||||||||||||*|||| targets:672   GGUACAUCAUUACCCUACCCCUAGCU   697 Target Full Sequence	1.5	Zea mays clone 1229283 mRNA sequence	NA	coding protein	psRNATarget