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BaseInfo

ncRNA ID	novel_zma_miR1239
Species	Zea mays
Class	miRNA
Genome position	Chr2:187197656-187197752 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AUAAUCUGAGUAUAUUAUAAUCUC - 24
Stem-loop(if miRNA)	--         C  GC                               A   GAUUAUAAU UA  UAGAUUAUAUAAUCCAACUUAUUUUGAACUA G   ||||||||| ||  ||||||||||||||||||||||||||||||| C   CUAAUAUUA AU  GUCUAAUAUAUUAGGUUGAAUAAAACUUGAU G CU         U  GA                               U
Stem-loop sequence	GAUUAUAAUCUAGCUAGAUUAUAUAAUCCAACUUAUUUUGAACUAAGCGUUAGUUCAAAAUAAGUUGGAUUAUAUAAUCUGAGUAUAUUAUAAUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949179.1	ncRNA:24   CUCUAAUAUUAUAUGAGUCUAAUA   1   |=|||||||||*|||||||||||| targets:24   GGGAUUAUAAUUUACUCAGAUUAU   47 Target Full Sequence	1.5	Zea mays clone 398195 mRNA sequence	NA	coding protein	psRNATarget
XM_008649350.2	ncRNA:24   CUCUAAUAUUAUAUGAGUCUAAUA   1   |||||*|||||*|||||||||||| targets:1105   GAGAUAAUAAUCUACUCAGAUUAU   1128 Target Full Sequence	2.5	PREDICTED: Zea mays Short-chain dehydrogenase/reductase SDRA (LOC100273876), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962485.1	ncRNA:24   CUCUAAUAUUAUAUGAGUCUAAUA   1   |||||*|||||*|||||||||||| targets:1003   GAGAUAAUAAUCUACUCAGAUUAU   1026 Target Full Sequence	2.5	Zea mays clone 243099 dehydrogenase/reductase SDR family member 2 mRNA, complete cds	NA	coding protein	psRNATarget
BT069962.1	ncRNA:24   CUCUAAUAUUAUAUGAGUCUAAUA   1   |||||*|||||*|||||||||||| targets:949   GAGAUAAUAAUCUACUCAGAUUAU   972 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0335L17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674684.2	ncRNA:24   CUCUAAUAUUAUAUGAGUCUAAUA   1   |**|||*|*||||||||||||||| targets:754   GUAAUUUUCAUAUACUCAGAUUAU   777 Target Full Sequence	2.0	PREDICTED: Zea mays katanin p60 ATPase-containing subunit (LOC100283437), transcript variant X1, mRNA	NA	coding protein	psRNATarget