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BaseInfo

ncRNA ID ath-miRf10020-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UACUCGACCCCCUGGUCGAGU - NA
Stem-loop(if miRNA)           CCCA             --      --------------------------CAUUCUUCC    C      CCACCAGGUCGAGUAACCUCAGCUCA
AUACUCGACC    GGUCGAGUGACUU  UGGAGC                                   CAUC ACUCGA                          G
||||||||||    |||||||||||||  ||||||                                   |||| ||||||                          G
UAUGAGCUGG    CCAGCUCAUUGAA  AUCUCG                                   UAUG AGCUGG                          C
          UCCC             CC      CUUACCAGCUCACUACCACUACCACACCGCUUCAC    -      UCCCCCAGCUCAUAACAGUAGCUCAC
Stem-loop sequence AUACUCGACCCCCAGGUCGAGUGACUUUGGAGCCAUUCUUCCCAUCCACUCGACCACCAGGUCGAGUAACCUCAGCUCAGGCCACUCGAUGACAAUACUCGACCCCCUGGUCGAGUAUCACUUCGCCACACCAUCACCAUCACUCGACCAUUCGCUCUACCAAGUUACUCGACCCCCUGGUCGAGUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183311.1
ncRNA:21   UGAGCUGGUCCCCCAGCUCAU   1
  ||||||||||||||||||||=
targets:437   ACUCGACCAGGGGGUCGAGUG   457

1.0 Arabidopsis thaliana clone asmbl_5275 unknown mRNA sequence NA coding protein psRNATarget
EF183005.1
ncRNA:21   UGAGCUGGUCCCCCAGCUCAU   1
  |||||||||*||||||||||=
targets:1925   ACUCGACCACGGGGUCGAGUG   1945

2.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget