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BaseInfo

ncRNA ID	novel_zma_miR1228
Species	Zea mays
Class	miRNA
Genome position	Chr10:124375199-124375246 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR1583942
Length	21
Mature sequence(if miRNA)	1 - CCCUCUAAUCCCCUCCGGUUU - 21
Stem-loop(if miRNA)	--              A     GU   ACCGGAGGGGAUUG AGGGG  U   |||||||||||||| |||||   UGGCCUCCCCUAAU UCCCC  U UU              C     GA
Stem-loop sequence	ACCGGAGGGGAUUGAAGGGGGUUUAGCCCCUCUAAUCCCCUCCGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651784.2	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||||||||||||||||| targets:670   AAACCGGAGGGGAUUAGAGGG   690 Target Full Sequence	0.0	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008651781.2	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||||||||||||||||| targets:670   AAACCGGAGGGGAUUAGAGGG   690 Target Full Sequence	0.0	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008651780.2	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||||||||||||||||| targets:670   AAACCGGAGGGGAUUAGAGGG   690 Target Full Sequence	0.0	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651782.2	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||||||||||||||||| targets:670   AAACCGGAGGGGAUUAGAGGG   690 Target Full Sequence	0.0	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||*||||||||=||||| targets:4062   AAACCGAAGGGGAUUGGAGGG   4082 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
XM_008666769.2	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||||*|||||||||||* targets:1548   AAACCGGACGGGAUUAGAGGA   1568 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034839.1	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||*||*||||||||||| targets:1316   AAACCGAAGAGGAUUAGAGGG   1336 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0022H05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137967.1	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||*||*||||||||||| targets:1316   AAACCGAAGAGGAUUAGAGGG   1336 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192771 (AY111680), mRNA	NA	coding protein	psRNATarget
EU960786.1	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||*||*||||||||||| targets:1229   AAACCGAAGAGGAUUAGAGGG   1249 Target Full Sequence	2.5	Zea mays clone 228656 mRNA sequence	NA	coding protein	psRNATarget
XM_008683144.2	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   ||||||*||*||||||||||| targets:1286   AAACCGAAGAGGAUUAGAGGG   1306 Target Full Sequence	2.5	PREDICTED: Zea mays Synaptotagmin-2 (AY111680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647761.2	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   |||||*|||||*||||||||| targets:815   AAACCAGAGGGAAUUAGAGGG   835 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647760.2	ncRNA:21   UUUGGCCUCCCCUAAUCUCCC   1   |||||*|||||*||||||||| targets:815   AAACCAGAGGGAAUUAGAGGG   835 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X2, mRNA	NA	coding protein	psRNATarget