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BaseInfo

ncRNA ID novel_zma_miR1226
Species Zea mays
Class miRNA
Genome position Chr7:150079374-150079453 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2287163
Length 24
Mature sequence(if miRNA) 1 - GGAUUGAGUGAGAUUAGAUGAGUU - 24
Stem-loop(if miRNA) --      AG  A    A  UG    UAAAUCCUAACUAA
  GGAUUG  UG GAUU GA  AGUU              G
  ||||||  || |||| ||  ||||
  CCUAAC  AC CUAA CU  UUUA              U
UA      CU  C    C  UU    AUUUUUUCACAAAU
Stem-loop sequence GGAUUGAGUGAGAUUAGAUGAGUUUAAAUCCUAACUAAGUUAAACACUUUUUUAAUUUUUUCCAAUCCCAUCCAAUCCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008674375.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||||||||||||||||||
targets:3434   AACUCAUCUAAUCUCACUCAAUCC   3457

0.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||||||||||||||||||
targets:3403   AACUCAUCUAAUCUCACUCAAUCC   3426

0.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||||||||||||||||||
targets:3390   AACUCAUCUAAUCUCACUCAAUCC   3413

0.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
AY112141.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||||||||||||||||||||||=
targets:224   AACUCAUCUAAUCUCACUCAAUCU   247

1.0 Zea mays CL24213_1 mRNA sequence NA coding protein psRNATarget
XM_008672266.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||=|||||||||||||=|||||||
targets:1192   AAUUCAUCUAAUCUCAUUCAAUCC   1215

1.5 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008672265.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||=|||||||||||||=|||||||
targets:940   AAUUCAUCUAAUCUCAUUCAAUCC   963

1.5 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA NA coding protein psRNATarget
BT062183.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*|||||||||||||||
targets:242   AACUCAUCCAAUCUCACUCAAUCC   265

1.0 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
JB166338.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*|||||||||||||||
targets:83   AACUCAUCCAAUCUCACUCAAUCC   106

1.0 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
HI405877.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*|||||||||||||||
targets:83   AACUCAUCCAAUCUCACUCAAUCC   106

1.0 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*|||||||||||||||
targets:83   AACUCAUCCAAUCUCACUCAAUCC   106

1.0 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
EZ092645.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*|||||||||||||||
targets:12   AACUCAUCCAAUCUCACUCAAUCC   35

1.0 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
LQ235173.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*|||||||=|||||||
targets:94   AACUCAUCCAAUCUCAUUCAAUCC   117

2.5 Sequence 1168 from Patent EP2985353 NA coding protein psRNATarget
HI403043.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*|||||||=|||||||
targets:94   AACUCAUCCAAUCUCAUUCAAUCC   117

2.5 Sequence 1168 from Patent EP2074227 NA coding protein psRNATarget
JB163504.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*|||||||=|||||||
targets:94   AACUCAUCCAAUCUCAUUCAAUCC   117

2.5 Sequence 1168 from Patent EP2559767 NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:2344   AACCCAUCCAAUCUCACUCAAUCC   2367

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:2284   AACCCAUCCAAUCUCACUCAAUCC   2307

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:2277   AACCCAUCCAAUCUCACUCAAUCC   2300

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:2149   AACCCAUCCAAUCUCACUCAAUCC   2172

1.0 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:2148   AACCCAUCCAAUCUCACUCAAUCC   2171

1.0 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*||||*||||||||||
targets:2207   AACUCAUCCAAUCCCACUCAAUCC   2230

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
XM_008669549.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*|||||||||*||||||||||
targets:2078   AACACAUCUAAUCCCACUCAAUCC   2101

1.5 PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:2076   AACCCAUCCAAUCUCACUCAAUCC   2099

1.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT042044.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*|||||||||*||||||||||
targets:1361   AACACAUCUAAUCCCACUCAAUCC   1384

1.5 Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:451   AACCCAUCCAAUCUCACUCAAUCC   474

1.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
EZ064016.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*||||*||||||||||
targets:116   AACUCAUCCAAUCCCACUCAAUCC   139

2.5 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
JB166363.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*||||*||||||||||
targets:76   AACUCAUCCAAUCCCACUCAAUCC   99

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*||||*||||||||||
targets:76   AACUCAUCCAAUCCCACUCAAUCC   99

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405902.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  ||||||||*||||*||||||||||
targets:76   AACUCAUCCAAUCCCACUCAAUCC   99

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
JB166354.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:75   AACCCAUCCAAUCUCACUCAAUCC   98

1.0 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:75   AACCCAUCCAAUCUCACUCAAUCC   98

1.0 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
HI405893.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*|||||||||||||||
targets:75   AACCCAUCCAAUCUCACUCAAUCC   98

1.0 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*=|||*|||||||||||||||
targets:87   AACAUAUCCAAUCUCACUCAAUCC   110

1.0 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
HI405878.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*=|||*|||||||||||||||
targets:87   AACAUAUCCAAUCUCACUCAAUCC   110

1.0 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
JB166339.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*=|||*|||||||||||||||
targets:87   AACAUAUCCAAUCUCACUCAAUCC   110

1.0 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
LQ238979.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*=|||*|||||||||||||=|
targets:75   AACCUAUCAAAUCUCACUCAAUUC   98

2.5 Sequence 4974 from Patent EP2985353 NA coding protein psRNATarget
JB167310.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*=|||*|||||||||||||=|
targets:75   AACCUAUCAAAUCUCACUCAAUUC   98

2.5 Sequence 4974 from Patent EP2559767 NA coding protein psRNATarget
HI406849.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*=|||*|||||||||||||=|
targets:75   AACCUAUCAAAUCUCACUCAAUUC   98

2.5 Sequence 4974 from Patent EP2074227 NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:5800   AACCCAUCCAAUCCCACUCAAUCC   5823

2.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1225   AACCCAUCCAAUCCCACUCAAUCC   1248

2.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1195   AACCCAUCCAAUCCCACUCAAUCC   1218

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1195   AACCCAUCCAAUCCCACUCAAUCC   1218

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1077   AACCCAUCCAAUCCCACUCAAUCC   1100

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1954   AACCCAUCCAAUCCCACUCAAUCC   1977

2.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1954   AACCCAUCCAAUCCCACUCAAUCC   1977

2.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:2496   AACCCAUCCAAUCCCACUCAAUCC   2519

2.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1811   AACCCAUCCAAUCCCACUCAAUCC   1834

2.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1811   AACCCAUCCAAUCCCACUCAAUCC   1834

2.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1526   AACCCAUCCAAUCCCACUCAAUCC   1549

2.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1526   AACCCAUCCAAUCCCACUCAAUCC   1549

2.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1462   AACCCAUCCAAUCCCACUCAAUCC   1485

2.5 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:1462   AACCCAUCCAAUCCCACUCAAUCC   1485

2.5 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT035134.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||||||*||||||
targets:1212   AACCCAUCCAAUCUCACCCAAUCC   1235

2.5 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds NA coding protein psRNATarget
NM_001138165.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||||||*||||||
targets:1212   AACCCAUCCAAUCUCACCCAAUCC   1235

2.5 Zea mays B3 domain-containing protein (LOC100192994), mRNA NA coding protein psRNATarget
BT069115.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:524   AACCCAUCCAAUCCCACUCAAUCC   547

2.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
XM_008647186.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||||||*||||||
targets:1050   AACCCAUCCAAUCUCACCCAAUCC   1073

2.5 PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA NA coding protein psRNATarget
BT087300.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||||||*||||||
targets:1017   AACCCAUCCAAUCUCACCCAAUCC   1040

2.5 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:172   AACCCAUCCAAUCCCACUCAAUCC   195

2.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:870   AACCCAUCCAAUCCCACUCAAUCC   893

2.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:741   AACCCAUCCAAUCCCACUCAAUCC   764

2.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
JB163555.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:94   AACCCAUCCAAUCCCACUCAAUCC   117

2.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
JB163466.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:94   AACCCAUCCAAUCCCACUCAAUCC   117

2.5 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
HI403094.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:94   AACCCAUCCAAUCCCACUCAAUCC   117

2.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ235135.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:94   AACCCAUCCAAUCCCACUCAAUCC   117

2.5 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
HI403005.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:94   AACCCAUCCAAUCCCACUCAAUCC   117

2.5 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:94   AACCCAUCCAAUCCCACUCAAUCC   117

2.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:85   AACCCAUCCAAUCCCACUCAAUCC   108

2.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:85   AACCCAUCCAAUCCCACUCAAUCC   108

2.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:85   AACCCAUCCAAUCCCACUCAAUCC   108

2.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:75   AACCCAUCCAAUCCCACUCAAUCC   98

2.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:75   AACCCAUCCAAUCCCACUCAAUCC   98

2.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   UUGAGUAGAUUAGAGUGAGUUAGG   1
  |||*||||*||||*||||||||||
targets:75   AACCCAUCCAAUCCCACUCAAUCC   98

2.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget