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BaseInfo

ncRNA ID	novel_zma_miR1224
Species	Zea mays
Class	miRNA
Genome position	Chr7:142286624-142286718 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089715;SRR2287159;SRR2287164;SRR1618882;SRR1618883;SRR1745812;SRR5100255;SRR5451003;SRR2089700
Length	19
Mature sequence(if miRNA)	77 - GGCAGUCUCCUUGGCUAGC - 95
Stem-loop(if miRNA)	--          U    U       GC UC  -   GUC        CG   UAGCCAAGGA GACU GCCUGUG  C  CA UCA   GCAGAGGA  C   |||||||||| |||| |||||||  |  || |||   ||||||||   AUCGGUUCCU CUGA CGGACGC  G  GU GGU   CGUCUUCU  U CG          -    -       UA CU  U   GUU        UG
Stem-loop sequence	UAGCCAAGGAUGACUUGCCUGUGGCCUCCAUCAGUCGCAGAGGACGCUGUUCUUCUGCUUGUGGUUGUCGAUCGCAGGCAGUCUCCUUGGCUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT062831.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   ||||||||||||||||||| targets:234   GCUAGCCAAGGAGACUGCC   252 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0354L14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176546.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   ||||||||||||||||||| targets:862   GCUAGCCAAGGAGACUGCC   880 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383927 (LOC100383927), mRNA	NA	coding protein	psRNATarget
BT068645.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   ||||||||||||||||||| targets:862   GCUAGCCAAGGAGACUGCC   880 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0360A11 mRNA, complete cds	NA	coding protein	psRNATarget
BT054579.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *|||||||||||||||||| targets:452   ACUAGCCAAGGAGACUGCC   470 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds	NA	coding protein	psRNATarget
BT054579.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:297   ACUAGCCAAGGAGGCUGCC   315 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152615.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *|||||||||||||||||| targets:452   ACUAGCCAAGGAGACUGCC   470 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA	NA	coding protein	psRNATarget
NM_001152615.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:297   ACUAGCCAAGGAGGCUGCC   315 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA	NA	coding protein	psRNATarget
LQ237933.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:8   ACUAGCCAAGGAGGCUGCC   26 Target Full Sequence	2.5	Sequence 3928 from Patent EP2985353	NA	coding protein	psRNATarget
JB166264.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:8   ACUAGCCAAGGAGGCUGCC   26 Target Full Sequence	2.5	Sequence 3928 from Patent EP2559767	NA	coding protein	psRNATarget
HI405803.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:8   ACUAGCCAAGGAGGCUGCC   26 Target Full Sequence	2.5	Sequence 3928 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020545766.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   |*||||||||||||*|||| targets:2537   GGUAGCCAAGGAGAGUGCC   2555 Target Full Sequence	2.5	PREDICTED: Zea mays probable calcium-transporting ATPase 4, plasma membrane-type (LOC103640660), mRNA	NA	coding protein	psRNATarget