Search result

BaseInfo

ncRNA ID novel_zma_miR1223
Species Zea mays
Class miRNA
Genome position Chr7:130358408-130358469 [+]
Reference genome RefGen_v4
Source SRR2089710
Length 21
Mature sequence(if miRNA) 1 - AGGAUUAGAGGGGAUUGAGGG - 21
Stem-loop(if miRNA) A   -UUA                   UGA
 GGA    GAGGGGAUUGAGGGAGAAA   A
 |||    |||||||||||||||||||   C
 CCU    CUCUCUUAACUUUCUCUUU   U
C   CUAC                   UUA
Stem-loop sequence AGGAUUAGAGGGGAUUGAGGGAGAAAUGAACUAUUUUUCUCUUUCAAUUCUCUCCAUCUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020549567.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||||*
targets:1070   CCCUCAAUCCCCUCUAAUCCC   1090

1.0 PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008649581.2
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||||*
targets:1801   CCCUCAAUCCCCUCUAAUCCC   1821

1.0 PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA NA coding protein psRNATarget
EU952092.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||=|*
targets:471   CCCUCAAUCCCCUCUAAUUCC   491

2.5 Zea mays clone 1163776 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
HI403493.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||*||||||
targets:35   CCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
JB163954.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||*||||||
targets:35   CCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
LQ235623.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||*||||||
targets:35   CCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
XM_020545634.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||=|*
targets:7609   CCCUCAAUCCCCUCUAAUUCC   7629

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020545628.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||=|*
targets:7759   CCCUCAAUCCCCUCUAAUUCC   7779

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020545630.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||=|*
targets:7914   CCCUCAAUCCCCUCUAAUUCC   7934

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020545629.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||=|*
targets:7914   CCCUCAAUCCCCUCUAAUUCC   7934

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020545631.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||=|*
targets:7879   CCCUCAAUCCCCUCUAAUUCC   7899

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020545626.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||=|*
targets:7914   CCCUCAAUCCCCUCUAAUUCC   7934

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545633.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||||||||||||||||=|*
targets:7906   CCCUCAAUCCCCUCUAAUUCC   7926

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X9, mRNA NA coding protein psRNATarget
JB163696.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  =||||||||=||||||||||*
targets:70   UCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1360 from Patent EP2559767 NA coding protein psRNATarget
JB163863.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  =||||||||=||||||||||*
targets:70   UCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1527 from Patent EP2559767 NA coding protein psRNATarget
LQ235365.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  =||||||||=||||||||||*
targets:70   UCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1360 from Patent EP2985353 NA coding protein psRNATarget
HI403402.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  =||||||||=||||||||||*
targets:70   UCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1527 from Patent EP2074227 NA coding protein psRNATarget
LQ235532.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  =||||||||=||||||||||*
targets:70   UCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1527 from Patent EP2985353 NA coding protein psRNATarget
HI403235.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  =||||||||=||||||||||*
targets:70   UCCUCAAUCUCCUCUAAUCCC   90

2.5 Sequence 1360 from Patent EP2074227 NA coding protein psRNATarget
LQ235485.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  =|||||||||||||*||||||
targets:33   UCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
JB163816.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  =|||||||||||||*||||||
targets:33   UCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
HI403355.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  =|||||||||||||*||||||
targets:33   UCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
EZ098881.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  ||||=|||||||||*||||||
targets:80   CCCUUAAUCCCCUCCAAUCCU   100

2.5 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
BT088155.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  |=||||||||||||*||||||
targets:1466   CUCUCAAUCCCCUCCAAUCCU   1486

1.5 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
EZ055746.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  *|||||||||||||*||||||
targets:78   ACCUCAAUCCCCUCCAAUCCU   98

1.5 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
AY110351.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  *|||||||||||||*||||||
targets:44   ACCUCAAUCCCCUCCAAUCCU   64

1.5 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
NM_001154659.2
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  |*||=|||||||||||||||*
targets:2127   CACUUAAUCCCCUCUAAUCCA   2147

2.0 Zea mays transport inhibitor response 1 protein (LOC100281739), mRNA NA coding protein psRNATarget
EU957719.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  |*||=|||||||||||||||*
targets:2128   CACUUAAUCCCCUCUAAUCCA   2148

2.0 Zea mays clone 1612818 transport inhibitor response 1 protein mRNA, complete cds NA coding protein psRNATarget
XM_020548160.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  **||==||||||||||||||*
targets:4863   GACUUGAUCCCCUCUAAUCCA   4883

3.0 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008670752.2
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  **||==||||||||||||||*
targets:5090   GACUUGAUCCCCUCUAAUCCA   5110

3.0 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA NA coding protein psRNATarget
HI403290.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  |*||||||||||||*|||||*
targets:73   CACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
JB163751.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  |*||||||||||||*|||||*
targets:73   CACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
LQ235420.1
ncRNA:21   GGGAGUUAGGGGAGAUUAGGA   1
  |*||||||||||||*|||||*
targets:73   CACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.