Search result

BaseInfo

ncRNA ID	novel_zma_miR1221
Species	Zea mays
Class	miRNA
Genome position	Chr7:126389068-126389163 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	73 - GGGGUCCGGACCCACUGUUGGCAU - 96
Stem-loop(if miRNA)	-- CGCGGGGGUCCUGGACCUUGCUCCGGAGGUUCGGUCUACAU GCCC  U                                         G ||||  | UACG  U                                         U     GU GUCACCCAGGCCUGGGGGUACCCUUUUAUGGCCUGGGGACA
Stem-loop sequence	GCCCUCGCGGGGGUCCUGGACCUUGCUCCGGAGGUUCGGUCUACAUGUACAGGGGUCCGGUAUUUUCCCAUGGGGGUCCGGACCCACUGUUGGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545234.1	ncRNA:24   UACGGUUGUCACCCAGGCCUGGGG   1   =||*|=|||||||||||||||||| targets:4137   GUGGCGACAGUGGGUCCGGACCCC   4160 Target Full Sequence	1.0	PREDICTED: Zea mays ABC transporter I family member 1-like (LOC103642079), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB170390.1	ncRNA:24   UACGGUUGUCACCCAGGCCUGGGG   1   =|*=||*|||||*||||||||||| targets:52   GUAUCACCAGUGAGUCCGGACCCC   75 Target Full Sequence	2.5	Sequence 8054 from Patent EP2559767	NA	coding protein	psRNATarget
HI409929.1	ncRNA:24   UACGGUUGUCACCCAGGCCUGGGG   1   =|*=||*|||||*||||||||||| targets:52   GUAUCACCAGUGAGUCCGGACCCC   75 Target Full Sequence	2.5	Sequence 8054 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242059.1	ncRNA:24   UACGGUUGUCACCCAGGCCUGGGG   1   =|*=||*|||||*||||||||||| targets:52   GUAUCACCAGUGAGUCCGGACCCC   75 Target Full Sequence	2.5	Sequence 8054 from Patent EP2985353	NA	coding protein	psRNATarget