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BaseInfo

ncRNA ID novel_zma_miR1214
Species Zea mays
Class miRNA
Genome position Chr6:75672968-75673021 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089714;SRR2089715;SRR5451003;SRR5451004;SRR5451005;SRR5451006;SRR2089704;SRR2089706
Length 24
Mature sequence(if miRNA) 1 - GUCCACGGUCCGGACUGUCCGCGG - 24
Stem-loop(if miRNA) --  C    -  CC            GU
  GU CACG GU  GGACUGUCCGCG  G
  || |||| ||  ||||||||||||  G
  CG GUGC CA  UCUGACAGGCGC  U
GA  C    A  --            GG
Stem-loop sequence GUCCACGGUCCGGACUGUCCGCGGUGGUGGCGCGGACAGUCUACACGUGCGCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ059430.1
ncRNA:24   GGCGCCUGUCAGGCCUGGCACCUG   1
  *|||||||*||||||||||*||||
targets:47   GCGCGGACCGUCCGGACCGCGGAC   70

2.5 TSA: Zea mays contig60552, mRNA sequence NA coding protein psRNATarget
EU940813.1
ncRNA:24   GGCGCCUGUCAGGCCUGGCACCUG   1
  *|||||||*||||||||||*||||
targets:60   GCGCGGACCGUCCGGACCGCGGAC   83

2.5 Zea mays clone 1145688 mRNA sequence NA coding protein psRNATarget