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BaseInfo

ncRNA ID	novel_zma_miR1212
Species	Zea mays
Class	miRNA
Genome position	Chr6:56914060-56914139 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089712
Length	21
Mature sequence(if miRNA)	1 - UUGGGAGCCAGAAAAUCGGAG - 21
Stem-loop(if miRNA)	--                CG     G             A   UUGGGAGCCAGAAAAU  GAGGG AUUGGAGGGGCUA A   ||||||||||||||||  ||||| ||||||||||||| A   AACCCUCGGUUUUUUG  CUCCC UAACCUCCCCGAU C CA                AA     -             U
Stem-loop sequence	UUGGGAGCCAGAAAAUCGGAGGGGAUUGGAGGGGCUAAAACUUAGCCCCUCCAAUCCCUCAAGUUUUUUGGCUCCCAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU944975.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   |||||=||||||||||||||| targets:823   CUCCGGUUUUCUGGCUCCCAA   843 Target Full Sequence	1.0	Zea mays clone 236700 mRNA sequence	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   |||||=||||||||||||||| targets:2100   CUCCGGUUUUCUGGCUCCCAA   2120 Target Full Sequence	1.0	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
BT064167.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   ||||||||||||||||||||* targets:1528   CUCCGAUUUUCUGGCUCCCAC   1548 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0143P12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175145.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   ||||||||||||||||||||* targets:1528   CUCCGAUUUUCUGGCUCCCAC   1548 Target Full Sequence	1.0	Zea mays putative MATE efflux family protein (LOC100382400), mRNA	NA	coding protein	psRNATarget
NM_001149961.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   |||=||||||||||||||=|| targets:808   CUCUGAUUUUCUGGCUCCUAA   828 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276083 (LOC100276083), mRNA	NA	coding protein	psRNATarget
EU959921.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   |||=||||||||||||||=|| targets:808   CUCUGAUUUUCUGGCUCCUAA   828 Target Full Sequence	2.5	Zea mays clone 220633 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU973262.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   |||=||||||||||||||||* targets:1595   CUCUGAUUUUCUGGCUCCCAC   1615 Target Full Sequence	2.0	Zea mays clone 395708 mRNA sequence	NA	coding protein	psRNATarget
HI406214.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:30   UUCCGGUUUUGUGGCUCCCAA   50 Target Full Sequence	2.5	Sequence 4339 from Patent EP2074227	NA	coding protein	psRNATarget
JB166675.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:30   UUCCGGUUUUGUGGCUCCCAA   50 Target Full Sequence	2.5	Sequence 4339 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238344.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:30   UUCCGGUUUUGUGGCUCCCAA   50 Target Full Sequence	2.5	Sequence 4339 from Patent EP2985353	NA	coding protein	psRNATarget
EZ066710.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:76   UUCCGGUUUUAUGGCUCCCAA   96 Target Full Sequence	2.5	TSA: Zea mays contig02344, mRNA sequence	NA	coding protein	psRNATarget
BT065189.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:949   UUCCGGUUUUAUGGCUCCCAA   969 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds	NA	coding protein	psRNATarget
EU965698.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:1070   UUCCGGUUUUAUGGCUCCCAA   1090 Target Full Sequence	2.5	Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156624.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:1070   UUCCGGUUUUAUGGCUCCCAA   1090 Target Full Sequence	2.5	Zea mays uncharacterized LOC100283725 (gpm911), mRNA	NA	coding protein	psRNATarget
XM_020553374.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:1277   UUCCGGUUUUAUGGCUCCCAA   1297 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:2447   UUCCGGUUUUGUGGCUCCCAA   2467 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||*|||||||||| targets:2465   UUCCGGUUUUGUGGCUCCCAA   2485 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   =||||=||||||*|||||||| targets:4143   UUCCGGUUUUCUCGCUCCCAA   4163 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
XM_008674728.2	ncRNA:21   GAGGCUAAAAGACCGAGGGUU   1   ||*||||||||*||||||||| targets:718   CUACGAUUUUCGGGCUCCCAA   738 Target Full Sequence	2.5	PREDICTED: Zea mays 60S ribosomal protein L18A (LOC100284168), transcript variant X1, mRNA	NA	coding protein	psRNATarget