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BaseInfo

ncRNA ID novel_zma_miR1209
Species Zea mays
Class miRNA
Genome position Chr6:5392544-5392616 [+]
Reference genome RefGen_v4
Source SRR2089710
Length 24
Mature sequence(if miRNA) 50 - AGAAAUCUAUGAUUUGUAGUGGCG - 73
Stem-loop(if miRNA) --      G        --      G        CCU
  CCACUA AAAUCGUA  UUUCUA UGGCGGUU   U
  |||||| ||||||||  |||||| ||||||||   A
  GGUGAU UUUAGUAU  AAAGAU ACCGCCAA   A
GC      G        CU      G        AAG
Stem-loop sequence CCACUAGAAAUCGUAUUUCUAGUGGCGGUUCCUUAAGAAAACCGCCAGUAGAAAUCUAUGAUUUGUAGUGGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235184.1
ncRNA:24   GCGGUGAUG-UUUAGUAUCUAAAGA   1
  **||||*||-|||||||||||||||
targets:16   AACCACCACUAAAUCAUAGAUUUCU   40

3.0 Sequence 1179 from Patent EP2985353 NA coding protein psRNATarget
HI403054.1
ncRNA:24   GCGGUGAUG-UUUAGUAUCUAAAGA   1
  **||||*||-|||||||||||||||
targets:16   AACCACCACUAAAUCAUAGAUUUCU   40

3.0 Sequence 1179 from Patent EP2074227 NA coding protein psRNATarget
JB163515.1
ncRNA:24   GCGGUGAUG-UUUAGUAUCUAAAGA   1
  **||||*||-|||||||||||||||
targets:16   AACCACCACUAAAUCAUAGAUUUCU   40

3.0 Sequence 1179 from Patent EP2559767 NA coding protein psRNATarget