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BaseInfo

ncRNA ID	novel_zma_miR1204
Species	Zea mays
Class	miRNA
Genome position	Chr6:8013733-8013864 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287164;SRR2287165;SRR2089705
Length	24
Mature sequence(if miRNA)	109 - AGGGGUUGUUUGGUUCGUGGCUAA - 132
Stem-loop(if miRNA)	--    G          -C        ACC  C             -------------        CG   G   AGGG UUGUUUGGUU  GUGGCUAA   UG CACACUUUGCCUA             AGGUUAGU  UUC A   |||| ||||||||||  ||||||||   || |||||||||||||             ||||||||  ||| A   UUCC GACAAACCAA  UACUGAUU   AU GUGUGAAACGGAU             UCCAAUCA  AAG U AU    G          AC        -GA  A             UGAAAAGACGGAU        AU   U
Stem-loop sequence	AGGGGUUGUUUGGUUCGUGGCUAAACCUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAUAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGAUAAGUUAGUCAUCAAACCAAACAGGCCUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ110937.1	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||||||||||||||||=||||| targets:140   UUAGCCACGAACCAAACAGCCCCU   163 Target Full Sequence	1.5	TSA: Zea mays contig46598, mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||||||||||||||||=||||| targets:798   UUAGCCACGAACCAAACAGCCCCU   821 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||||||||||||||||=||||| targets:798   UUAGCCACGAACCAAACAGCCCCU   821 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||||||||||||||||=||||| targets:798   UUAGCCACGAACCAAACAGCCCCU   821 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||||||||||||||||=||||| targets:2763   UUAGCCACGAACCAAACAGCCCCU   2786 Target Full Sequence	1.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   |||||||=|||||||||||||=|| targets:3227   UUAGCCAUGAACCAAACAACCUCU   3250 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   |||||||=|||||||||||||=|| targets:3355   UUAGCCAUGAACCAAACAACCUCU   3378 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   |||||||=|||||||||||||=|| targets:3362   UUAGCCAUGAACCAAACAACCUCU   3385 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||||||||||||||||=||||* targets:85   UUAGCCACGAACCAAACAGCCCCA   108 Target Full Sequence	2.5	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   |||||||||||||||||||*|||| targets:109   UUAGCCACGAACCAAACAAGCCCU   132 Target Full Sequence	1.5	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   |||||||||||||||||||*|||| targets:109   UUAGCCACGAACCAAACAAGCCCU   132 Target Full Sequence	1.5	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   |||||||||||||||||||*|||| targets:109   UUAGCCACGAACCAAACAAGCCCU   132 Target Full Sequence	1.5	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020549322.1	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||*||||||||||||||||||| targets:1281   UUAGACACGAACCAAACAACCCCU   1304 Target Full Sequence	0.0	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase-like (LOC109939280), mRNA	NA	coding protein	psRNATarget
XM_008671564.2	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||*||||||||||||||||||| targets:1281   UUAGACACGAACCAAACAACCCCU   1304 Target Full Sequence	0.0	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase (LOC103646970), mRNA	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||||||*|||||||||=||||| targets:1572   UUAGCCACCAACCAAACAGCCCCU   1595 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
AY109434.1	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||*=||||||||||||=||||| targets:487   UUAGAUACGAACCAAACAGCCCCU   510 Target Full Sequence	2.5	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   AAUCGGUGCUUGGUUUGUUGGGGA   1   ||||||||*||||||||||*|||| targets:2662   UUAGCCACAAACCAAACAAGCCCU   2685 Target Full Sequence	2.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
XM_008662699.2	ncRNA:24   AAUC-GGUGCUUGGUUUGUUGGGGA   1   ||||-|||||*||||||||=||||| targets:2588   UUAGUCCACGCACCAAACAGCCCCU   2612 Target Full Sequence	2.5	PREDICTED: Zea mays scarecrow-like protein 34 (LOC103640045), mRNA	NA	coding protein	psRNATarget