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BaseInfo

ncRNA ID novel_zma_miR1200
Species Zea mays
Class miRNA
Genome position Chr2:217863231-217863313 [-]
Reference genome RefGen_v4
Source SRR1583944;SRR1583942
Length 22
Mature sequence(if miRNA) 1 - UCUAGAUGCAUGCUUAAUGGCC - 22
Stem-loop(if miRNA) --  U     G     -      -    AA    ACUUAG   AU
  CU UUAAG GUGUA CUAGAC GGCA  CUUU      UUG  U
  || ||||| ||||| |||||| ||||  ||||      |||
  GG AAUUC UACGU GAUCUG CCGU  GAAG      AAC  U
CC  U     G     A      G    -A    ----AA   GU
Stem-loop sequence CUUUUAAGGGUGUACUAGACGGCAAACUUUACUUAGUUGAUUUUGCAAAAGAAGAUGCCGGUCUAGAUGCAUGCUUAAUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
X98279.1
ncRNA:22   CCGGUAAUUCGUA-CGUAGAUCU   1
  *||||||||||||-|||||||||
targets:430   AGCCAUUAAGCAUAGCAUCUAGA   452

3.0 Z.mays high copy dispersed repeat DNA, ZHCR4 NA coding protein psRNATarget