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BaseInfo

ncRNA ID novel_zma_miR1199
Species Zea mays
Class miRNA
Genome position Chr6:74609157-74609248 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089714;SRR5451005
Length 24
Mature sequence(if miRNA) 69 - CUAAAACCAUAGGGAUUGAGGGGG - 92
Stem-loop(if miRNA) -CUAAAA            A           AGGGA   GA   GAU
       CCAUAGGGAUUG GGGGGAUUGGA     UUG  GAG   U
       |||||||||||| |||||||||||     |||  |||
       GGUAUCCCUAAC CCCCCUAAUUU     GAU  UUC   U
ACGGUUA            -           -AGGG   -G   AGU
Stem-loop sequence CUAAAACCAUAGGGAUUGAGGGGGAUUGGAAGGGAUUGGAGAGGAUUUUGACUUGUAGGGGAUUUAAUCCCCCCAAUCCCUAUGGAUUGGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ083462.1
ncRNA:24   GGGGGAGUUAGGGAUACCAAAAUC   1
  ||||||||||||||||||||||=|
targets:44   CCCCCUCAAUCCCUAUGGUUUUGG   67

1.5 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
BT087370.2
ncRNA:24   GGGGGAGUUAGGGAUACCAAAAUC   1
  ||*|||||||||||||||||||=|
targets:280   CCACCUCAAUCCCUAUGGUUUUGG   303

1.5 Zea mays full-length cDNA clone ZM_BFb0056A06 mRNA, complete cds NA coding protein psRNATarget