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BaseInfo

ncRNA ID novel_zma_miR1196
Species Zea mays
Class miRNA
Genome position Chr6:98485966-98486059 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089707
Length 24
Mature sequence(if miRNA) 71 - CCAUGUGGAUUGGGUGAGAUUGGA - 94
Stem-loop(if miRNA) ---C                G      ---U    UUAAAUCCCGAACA
    CAUGUGGAUUGGGUGA AUUGGA    GAGU              A
    |||||||||||||||| ||||||    ||||
    GUACACCUAACCUACU UAACCU    UUCA              G
CAGA                A      UUUU    UACUUUCUAAAACU
Stem-loop sequence CCAUGUGGAUUGGGUGAGAUUGGAUGAGUUUAAAUCCCGAACAAGUCAAAAUCUUUCAUACUUUUUUUCCAAUAUCAUCCAAUCCACAUGAGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT087300.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||||||||||||||||
targets:1023   UCCAAUCUCACCCAAUCCACAUGG   1046

0.0 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds NA coding protein psRNATarget
XM_008647186.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||||||||||||||||
targets:1056   UCCAAUCUCACCCAAUCCACAUGG   1079

0.0 PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001138165.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||||||||||||||||
targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241

0.0 Zea mays B3 domain-containing protein (LOC100192994), mRNA NA coding protein psRNATarget
BT035134.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||||||||||||||||
targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241

0.0 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds NA coding protein psRNATarget
EZ092645.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:18   UCCAAUCUCACUCAAUCCACAUGG   41

1.5 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
LQ238023.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

1.5 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
HI405893.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

1.5 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
JB166354.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

1.5 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
JB166338.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

1.5 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
HI405877.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

1.5 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

1.5 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

1.5 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
JB166339.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

1.5 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
HI405878.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

1.5 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
JB170105.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||=|||||||||||||
targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120

1.0 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
HI409644.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||=|||||||||||||
targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120

1.0 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
LQ241774.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||=|||||||||||||
targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120

1.0 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
BT086633.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:457   UCCAAUCUCACUCAAUCCACAUGG   480

1.5 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
BT062183.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:248   UCCAAUCUCACUCAAUCCACAUGG   271

1.5 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
BT063416.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:2082   UCCAAUCUCACUCAAUCCACAUGG   2105

1.5 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:2154   UCCAAUCUCACUCAAUCCACAUGG   2177

1.5 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:2155   UCCAAUCUCACUCAAUCCACAUGG   2178

1.5 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:2283   UCCAAUCUCACUCAAUCCACAUGG   2306

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:2290   UCCAAUCUCACUCAAUCCACAUGG   2313

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:2350   UCCAAUCUCACUCAAUCCACAUGG   2373

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
EU957033.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  *|||||||||||||||||||||||
targets:1400   CCCAAUCUCACCCAAUCCACAUGG   1423

0.0 Zea mays clone 1581039 mRNA sequence NA coding protein psRNATarget
EU957741.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  *|||||||||||||||||||||||
targets:1401   CCCAAUCUCACCCAAUCCACAUGG   1424

0.0 Zea mays clone 1613489 mRNA sequence NA coding protein psRNATarget
JB167489.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||=|||||=|||||||
targets:73   UCCAAUCUCAUCCAAUUCACAUGG   96

2.5 Sequence 5153 from Patent EP2559767 NA coding protein psRNATarget
LQ239158.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||=|||||=|||||||
targets:73   UCCAAUCUCAUCCAAUUCACAUGG   96

2.5 Sequence 5153 from Patent EP2985353 NA coding protein psRNATarget
HI407028.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||||||||||=|||||=|||||||
targets:73   UCCAAUCUCAUCCAAUUCACAUGG   96

2.5 Sequence 5153 from Patent EP2074227 NA coding protein psRNATarget
EZ081225.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=|||||||||=|||||||||||
targets:52   UCUAAUCUCACCUAAUCCACAUGG   75

1.5 TSA: Zea mays contig16865, mRNA sequence NA coding protein psRNATarget
BT041309.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=|||||||=|||||||||||||
targets:180   UCUAAUCUCAUCCAAUCCACAUGG   203

1.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
BT041309.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  *=||||*|||=|||||||||||||
targets:107   CUCAAUAUCAUCCAAUCCACAUGG   130

2.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
BT083591.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=|||||||=|||||||||||||
targets:1182   UCUAAUCUCAUCCAAUCCACAUGG   1205

1.0 Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds NA coding protein psRNATarget
EU973712.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=|||||||=|||||||||||||
targets:1286   UCUAAUCUCAUCCAAUCCACAUGG   1309

1.0 Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds NA coding protein psRNATarget
NM_001158639.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=|||||||=|||||||||||||
targets:1286   UCUAAUCUCAUCCAAUCCACAUGG   1309

1.0 Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=||||||||=||||||||||||
targets:3396   UCUAAUCUCACUCAAUCCACAUGG   3419

1.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=||||||||=||||||||||||
targets:3409   UCUAAUCUCACUCAAUCCACAUGG   3432

1.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=||||||||=||||||||||||
targets:3440   UCUAAUCUCACUCAAUCCACAUGG   3463

1.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
JB169733.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||||||||||||||||
targets:76   UCCAAUCCCACCCAAUCCACAUGG   99

1.0 Sequence 7397 from Patent EP2559767 NA coding protein psRNATarget
HI409272.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||||||||||||||||
targets:76   UCCAAUCCCACCCAAUCCACAUGG   99

1.0 Sequence 7397 from Patent EP2074227 NA coding protein psRNATarget
LQ241402.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||||||||||||||||
targets:76   UCCAAUCCCACCCAAUCCACAUGG   99

1.0 Sequence 7397 from Patent EP2985353 NA coding protein psRNATarget
XM_008678390.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||||||||||||||||
targets:1813   UCCAAUCCCACCCAAUCCACAUGG   1836

1.0 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008678388.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||||||||||||||||
targets:1829   UCCAAUCCCACCCAAUCCACAUGG   1852

1.0 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  *=|||||||||=||||||||||||
targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468

1.5 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  *=|||||||||=||||||||||||
targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468

1.5 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
JB170575.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||=|||||||||||||
targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99

2.0 Sequence 8239 from Patent EP2559767 NA coding protein psRNATarget
LQ242244.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||=|||||||||||||
targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99

2.0 Sequence 8239 from Patent EP2985353 NA coding protein psRNATarget
HI410114.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||=|||||||||||||
targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99

2.0 Sequence 8239 from Patent EP2074227 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

2.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

2.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

2.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

2.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

2.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

2.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
HI403090.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
EU951448.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:747   UCCAAUCCCACUCAAUCCACAUGG   770

2.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:876   UCCAAUCCCACUCAAUCCACAUGG   899

2.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:178   UCCAAUCCCACUCAAUCCACAUGG   201

2.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:530   UCCAAUCCCACUCAAUCCACAUGG   553

2.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT066441.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=||||*||||||||||||||||
targets:1529   UCUAAUCCCACCCAAUCCACAUGG   1552

1.0 Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555

2.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555

2.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840

2.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840

2.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:2213   UCCAAUCCCACUCAAUCCACAUGG   2236

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:2502   UCCAAUCCCACUCAAUCCACAUGG   2525

2.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983

2.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983

2.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1083   UCCAAUCCCACUCAAUCCACAUGG   1106

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020551501.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||=|||||||||||||
targets:1290   UCCAAUCCCAUCCAAUCCACAUGG   1313

2.0 PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:1231   UCCAAUCCCACUCAAUCCACAUGG   1254

2.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*|||=||||||||||||
targets:5806   UCCAAUCCCACUCAAUCCACAUGG   5829

2.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_020539455.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |||||||*||=|||||||||||||
targets:279   UCCAAUCCCAUCCAAUCCACAUGG   302

2.0 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552475.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  **||||||||||||||||||=|||
targets:2700   GACAAUCUCACCCAAUCCACGUGG   2723

1.5 PREDICTED: Zea mays exocyst complex component SEC3A-like (LOC103652873), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020552473.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  **||||||||||||||||||=|||
targets:2983   GACAAUCUCACCCAAUCCACGUGG   3006

1.5 PREDICTED: Zea mays exocyst complex component SEC3A-like (LOC103652873), transcript variant X1, mRNA NA coding protein psRNATarget
JB163481.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |=|||||*|||=||||||||||||
targets:100   UUCAAUCCCACUCAAUCCACAUGG   123

2.5 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
LQ235150.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |=|||||*|||=||||||||||||
targets:100   UUCAAUCCCACUCAAUCCACAUGG   123

2.5 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
HI403020.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |=|||||*|||=||||||||||||
targets:100   UUCAAUCCCACUCAAUCCACAUGG   123

2.5 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
EU942673.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |=|||||*|||=||||||||||||
targets:93   UUCAAUCCCACUCAAUCCACAUGG   116

2.5 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |=|||||*|||=||||||||||||
targets:1126   UUCAAUCCCACUCAAUCCACAUGG   1149

2.5 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
BT041052.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |=|||||*|||=||||||||||||
targets:1126   UUCAAUCCCACUCAAUCCACAUGG   1149

2.5 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
BT043046.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=|||||||=|*|||||||||||
targets:1088   UCUAAUCUCAUCAAAUCCACAUGG   1111

2.5 Zea mays full-length cDNA clone ZM_BFc0087D17 mRNA, complete cds NA coding protein psRNATarget
NM_001148796.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=|||||||=|*|||||||||||
targets:1088   UCUAAUCUCAUCAAAUCCACAUGG   1111

2.5 Zea mays uncharacterized LOC100274437 (pco129366(222)), mRNA NA coding protein psRNATarget
AY104584.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  ||=|||||||=|*|||||||||||
targets:1124   UCUAAUCUCAUCAAAUCCACAUGG   1147

2.5 Zea mays PCO129366 mRNA sequence NA coding protein psRNATarget
EU974368.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |=||||*|||=|||||||||||||
targets:1246   UUCAAUAUCAUCCAAUCCACAUGG   1269

2.0 Zea mays clone 447232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT066987.1
ncRNA:24   AGGUUAGAGUGGGUUAGGUGUACC   1
  |=|||||*|||=||||||||||||
targets:1417   UUCAAUCCCACUCAAUCCACAUGG   1440

2.5 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
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