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BaseInfo

ncRNA ID	novel_zma_miR1193
Species	Zea mays
Class	miRNA
Genome position	Chr10:114478258-114478338 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089712;SRR2089713;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR5451003;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089702;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	58 - AAAAAACACUCGGCAAAGAAGGCU - 81
Stem-loop(if miRNA)	-C                CUC   ----         C   C   UUUUCUUUGCCGAGUG   UUU    GGCACUCGG AAA C   ||||||||||||||||   |||    ||||||||| |||   GGAAGAAACGGCUCAC   AAA    CCGUGAGCC UUU U UC                AAA   CAGC         A   C
Stem-loop sequence	CUUUUCUUUGCCGAGUGCUCUUUGGCACUCGGCAAACCUCUUUACCGAGUGCCCGACAAAAAACACUCGGCAAAGAAGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680068.2	ncRNA:24   UCGGAAGAAACGGCUCACAAAAAA   1   |||||||||||||||||||||||* targets:194   AGCCUUCUUUGCCGAGUGUUUUUA   217 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UCGGAAGAAACGGCUCACAAAAAA   1   |||--||||||||||||||||||| targets:106   AGC--UCUUUGCCGAGUGUUUUUU   127 Target Full Sequence	0.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UCGGAAGAAACGGCUCACAA-AAAA   1   |||--|||||||||||||||-|||| targets:26   AGC--UCUUUGCCGAGUGUUAUUUU   48 Target Full Sequence	3.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UCGGAAGAAACGGCUCACAAAAAA   1   |||--||||||||||||||||||| targets:106   AGC--UCUUUGCCGAGUGUUUUUU   127 Target Full Sequence	0.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UCGGAAGAAACGGCUCACAA-AAAA   1   |||--|||||||||||||||-|||| targets:26   AGC--UCUUUGCCGAGUGUUAUUUU   48 Target Full Sequence	3.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UCGGAAGAAACGGCUCACAAAAAA   1   |||--||||||||||||||||||| targets:106   AGC--UCUUUGCCGAGUGUUUUUU   127 Target Full Sequence	0.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UCGGAAGAAACGGCUCACAA-AAAA   1   |||--|||||||||||||||-|||| targets:26   AGC--UCUUUGCCGAGUGUUAUUUU   48 Target Full Sequence	3.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   UCGGAAGAAACGGCUCACAAAAAA   1   ||**|||||||||||||||||||| targets:589   AGGGUUCUUUGCCGAGUGUUUUUU   612 Target Full Sequence	0.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   UCGG---AAGAAACGGCUCACAAAAAA   1   *|=|---|||||||||||*|||||||| targets:1217   UGUCAUAUUCUUUGCCGAUUGUUUUUU   1243 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   UCGG---AAGAAACGGCUCACAAAAAA   1   *|=|---|||||||||||*|||||||| targets:1267   UGUCAUAUUCUUUGCCGAUUGUUUUUU   1293 Target Full Sequence	1.5	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:24   UCGGAAGAAACGGCUCACAAAAAA   1   ||--|||||||=|||||||||||* targets:433   AG--UUCUUUGUCGAGUGUUUUUG   454 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:24   UCGGAAGAAACGGCUCACAAAAAA   1   ||--|||||||=|||||||||||* targets:685   AG--UUCUUUGUCGAGUGUUUUUG   706 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671632.2	ncRNA:24   UCGG---AAGAAACGGCUCACAAAAAA   1   ||||---||*|||*||||||||||||* targets:735   AGCCAAAUUAUUUACCGAGUGUUUUUA   761 Target Full Sequence	3.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RNF181 homolog (LOC103647067), mRNA	NA	coding protein	psRNATarget